XLOC_000923 (appa)


Basic Information

Item Value
gene id XLOC_000923
gene name appa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 617620 ~ 656693 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001474
gtagagctgCTGCAGCGTGAGCAGCAGGAGATGTCCGCTCAGTTGGCGAATCTGCAGAGTGACGCGCGTGTGAGTTATGGGAACGATGCGCTGATGCCCGACAGCACCGCCGGCCTGGAGCTGCTGCCCGCCGAGGACACACAGGGGTTCGGCTTCATACACCCCGAGAGCTTCAACCAGCCCAACACACACAACcaggTTGAGCCTGTCGATGCCCGACCTGTTCCAGACCTAGACCTGGCAACCCGACCAGTGTCTGGACTGAAGCCTGATGACATTCCTGAGCTGCGGATGGAAGCTGAAGAGAGACACAGTGAAGTCTACCACCAGAAGCtgGTTTTCTTTGCGGAGGACGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGCGTCGTCATAGCAACCATCATCGTCATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGCATCATCGAGGTGGACGCGGCCGTGACTCCAGAGGAGCGTCATCTGTCTAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTTGAGCAGATGCACAACTGATGGAGCACCGTCACCCCTAACCCTCCCCGAACCCTCCCCGAACCCTCCTCAGACGGTGCAGGAGATGCCAGAACATCAACAAACATCACCGTTGGCCAGATCACGGTCAGAAATGAGCAATCAGAGTGAACACATAGTTCAGATTCAATTCAAATCACTGGTCAAAGTGAACACAATTTAGATTCAGTCCAAATTACTGGCCAAAGTGAACACACAATTCAGATTCAGTTTAAGTTCATGCATAATGCAAATTTCAGTAGGATTCACATTTTATTGAATGCCTAATTCATATTTAGTCCAAATTcatattacaaaacaaacacataaatctgATTCACTTTAAATCGCTGGCCATAGTGAACACAAAATTCAAATTCAATCCAAATCACTGGCAAAAGTGAACACAAAATTCAGATTCAGACTAAATCATTTTCCAAAGTGAACACATAATTCAGATTCTGTCCAAATCACAAGCCAATATAATCACATAATTTAGATTCAGTTCAAATCACTGGCCAAAGTGAACACAAAATTAGATTCAGTTCAAATCACTGCCCaatttaaacacacaaatcaGATCCAATTCAATTCTCTGGCCAAAGTGAACACAGAAttcagattcaattcaattctctGGCCAAAGTGAACACACTAttcagattcaattcaattctctGGCCAAAGTGAACACACTAttcagattcaattcaattctctTGCTAAAGTGAACACACAATTCAGATTCAGTTCAAATCACTGGCCAAAGTGAACACACAATTCAGATTCAGTCTAAATCACCAGCCAATATAATCACATAAAATAGATTCAGTCCAAATCACTGGCCAAATTGAACGCAATATTCAGATCCAATTAAAACCCCTGGCCAACgtaaataaacaattcatattcaatttaaaTCACTGGTCAATGTAAACACAAAACTCAGATTAAATCCAAATCACTGATAATATTCCTCTGCTACAGTAGGCCAGTCCAGGTTCTGGTGTATTCTGGGCTGGTTCTGGTGTTTTCTGCACCGTCTGCTCTCACACTACTAAACGAGTGAAACACTGGTGTATTTGAGGGCTGAACGTGCGAGACTTCCTCCGTCAGTCGCGTctccttcctcttcctcctcacaCTGACTGCAGCTGTGCTGTGTTTGGTGACGCCGGTCATAGACCAGAAAATCACTATAAATCTAGTGCTTACATTGATGTCCTTCTGAATGAGACCTGGAAATTGTTTGATTGTTTCTgatttgtttttccaaaaaaaaaaaaaaagaaagaattttgccaaaaaaaaaacaaacaaacatttttttagtttgtgaATATTGAAGTAACGCAAAAAGAAAGACTAGCTGTAACTGTGTAGTGCATgatagaaaacaaaaactgacgGGAAATACATGCTATTTGGGTCTTTTCTCACGTAGAGGCGTGTTAGCAGGGTTAAACTGTACAACTTGTGAAATGTGATTTGAGTTGCACAAGAAAAGAGAACTCGATTGGCTTCTGCTTTGATAGTTTTAAGCTGGATTAAACGGATTCGTGCTTTTATTTCAATATCATttctagttgttgtttttttatcaggCTGAGTGGATCCAGCCGAAGCTGTCCATGTACATTTACTGTCTTCAATGTTTTCGTCCTATGCATTTCGAGAGATTTATTTACCTCCTCTTTATGAACAGCTATTTAATTTCCGTTCTCCATTGGACTCGTGGTTGTCTGTGTTTTTTAAGCAGGTGTTGGGCTCGGGTGGGATTGTGGGTTAttctgtgtatgtttgtatgtttttctcCAGTCGGTTTTGTGTTGGTTCGTCActccatgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagatGTAAAAATCTCCCGTTTCTGGTGTTTCACTGCAGAAACAGATCCTGCTGcattcaaaccactgcaaaaTCACAAGAAATCTGTTTCATTTAATTacgttttaattattttgtgcattgcaattttttatttgaCTTCAGGTTGTTGTAACTGCAAtgaaactaaaatatgatttCAAGTATTTATCATAGTTGCATTTGTGCTGAATgtaattaatgcattttattaGCCGGGtccagactttttttttactgcattacATTACTCGACTTAAAGTGGTCATGTGATACtttcttaattaattaatgtgaatatatttatatttataaaccaTATTTATACAtcaaaacaaatcataaataacatATAATCCACTATTTTCTGTCCCCATTTTTGACTCTCATCAGAACACACAGTTTGAGTGGGCGGAGCCAACATACTCTGTAGTAAACACctactgctctgattggctgagagttTTGCATATTAACAAGATTCAACATGCAGTGATGTAGAAGTGGGATTGGCTGATGGTTTTGCATATTTACAAGGCTCAGCAGGCTGTGAAGTAGAAGTGGGCGTGGCTTATCCACCCTATTACATCACATAAAATACAACATTGCAGTGGTTTTGTCTGGAGGCTTCAATATATTTCAAGTATTTATCATGGTTGGTTGCATTTGTGCTGAATATTAATTAATGCGTTATTATTAATCATGTCTagagatattatttttattgctgcATTACAGTCATGCAGATCTGTTTAAATTGGTCATGTgatacttttttaattaattaatgtttttattttacattattctcTGAGCTCCACTTATCATATCATCAATATTTATACATCAAAACACAATCATATTTACAAATAATCAAATTTTCTGTCCCCATTTTTGACTCTTATCAGAACACACAGTTTCAGTGGGCGTGGCCAACTGTCGACTCAGAAGGGAACACCCACTGCTGTGATTGGCTAACAGTTTTGCATAATAACAAGGCTCAGCTTGCAGTGATGGATATAGAAGTGGGATTGGCTGacagttttgcatattaacaAGGCTCAGCAGGCAATGAAATAGAAGTGGGCGTGGCTTATCCACCCTATTACGCCACATAATATACACCATTCCAGTGGTTTTGTCAGAAATGCTTCAATAGAagctgattttatttgatttctgaaACTTGTGGAATATTGATGAGCTCGTATATAAGCTCAATATATAAAGGGAATTCTGCGTTCTCACTTCATGACCTCTTTAACAACGCAAGCCAATATTAGTGGATCATTTGTCTTCGTGCTCATGCAAATCTCTTGTGATCTTGTGCTGAATGTGGTGTGATCTGTCCTGCAGCGTTAAATGATCTTGTCGTTCGTCTGTTGATCACTCACTCCTCCTCTTGTGTTTTGTTGTAGACActttctgatttaaatgatctacaGATGATCAATAATAATCGGCTATCTGATGAATGTCAGTGGGAGCAGCGGTGCATTGTGGGTAATGCTTTGGGTTGCTGTGGTTTGATCAGATGTGCTGAAAGATGGCGATAAACTTCTTTTTCTCTGTCTATCGTTTGCTTTGACTGGAAAACTACTGCGCTTTCTACACTGTATTCCATAAATAAAGTTTCGAATGTACATACAGACCCACGTTTGGCATGCCTTGTTTGTTTACAGTGCACAAATCAGACCTACTCTCAGTTAGAACTGTAAATATTTGGGATTATTCAGGTGTTTATTTGATTGAACATGCATCTGAgttaaatataaaactgatatcggttcataaataaacaaagggacaataaaagcatttattaaatat
>TCONS_00001475
GTAACACAGCATTGCGCCTGGAGCTCCTTTTTTCCATGTATTTTCAATGTTTAACATCCATGTCTGTGGTCATTTTTCAGTGTCTGGACTGAAGCCTGATGACATTCCTGAGCTGCGGATGGAAGCTGAAGAGAGACACAGTGAAGTCTACCACCAGAAGCtgGTTTTCTTTGCGGAGGACGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGCGTCGTCATAGCAACCATCATCGTCATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGCATCATCGAGGTGGACGCGGCCGTGACTCCAGAGGAGCGTCATCTGTCTAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTTGAGCAGATGCACAACTGATGGAGCACCGTCACCCCTAACCCTCCCCGAACCCTCCCCGAACCCTCCTCAGACGGTGCAGGAGATGCCAGAACATCAACAAACATCACCGTTGGCCAGATCACGGTCAGAAATGAGCAATCAGAGTGAACACATAGTTCAGATTCAATTCAAATCACTGGTCAAAGTGAACACAATTTAGATTCAGTCCAAATTACTGGCCAAAGTGAACACACAATTCAGATTCAGTTTAAGTTCATGCATAATGCAAATTTCAGTAGGATTCACATTTTATTGAATGCCTAATTCATATTTAGTCCAAATTcatattacaaaacaaacacataaatctgATTCACTTTAAATCGCTGGCCATAGTGAACACAAAATTCAAATTCAATCCAA
>TCONS_00001476
AGAGCTATAACCAGCCCAACGCACACAACTAGGTTGAGCCTGTCGATGCCCGACCTGTTCCAGACCTAGACCTGGCAACCCGACCAGTGTCTGGACTGAAGCCTGATGACATTCCTGAGCTGCGGATGGAAGCTGAAGAGAGACACAGTGAAGTCTACCACCAGAAGCtgGTTTTCTTTGCGGAGGACGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGCGTCGTCATAGCAACCATCATCGTCATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGCATCATCGAGGTGGACGCGGCCGTGACTCCAGAGGAGCGTCATCTGTCTAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTTGAGCAGATGCACAACTGATGGAGCACCGTCACCCCTAACCCTCCCCGAACCCTCCCCGAACCCTCCTCAGACGGTGCAGGAGATGCCAGAACATCAACAAACATCACCGTTGGCCAGATCACGGTCAGAAATGAGCAATCAGAGTGAACACATAGTTCAGATTCAATTCAAATCACTGGTCAAAGTGAACACAATTTAGATTCAGTCCAAATTACTGGCCAAAGTGAACACACAATTCAGATTCAGTTTAAGTTCATGCATAATGCAAATTTCAGTAGGATTCACATTTTATTGAATGCCTAATTCATATTTAGTCCAAATTcatattacaaaacaaacacataaatctgATTCACTTTAAATCGCT
>TCONS_00001478
ATGCGGTCGAGGGAGCTCTTCATATTACTGATGGCCGTCGCGTCGACGCTCGCGGTGGAGGTGCCGTCAGACTCCGGGACGGGGCTTCTGGCCGAGCCACAGATCGCCATGTTCTGCGGGAAACTCAACATGCACATCAACATCCAGAGCGGGAAATGGGAGCCGGATCCGTCCGGAAGCAAGAGCTGCATCGGGAATAAAGAGGGAATCCTGCAGTACTGCCAGGAGgTGTATCCGGAGCTGCAGATCACCAATGTGGTGGAGGCCAATCAGCCGGTCAGCATCTGGGACTGGTGTAAGAAGAGCCGCAAGCAGTGCCGCAGTCACATGCACATCGTAGTGCCGTACCGCTGCCTGGTTGGGGAGTTTGTCAGCGATGCTCTGCTGGTTCCTGATAAGTGTAAGTTCCTGCATCAGGAGCGCATGGACATGTGTGAGAGTCACCTGCACTGGCACACCGTCGCCAAAGagTCGTGTGGTGACCGCAGCATGAATCTGCATGATTATGGGATGCTGTTGCCGTGTGGAATTGACCGTTTCCGGGGTGTGGAGTTCGTGTGCTGTCCTGCAGACGCGGGTAAAGAGTCTGAGAGCGCCGCTGTGGAGGAGGACGATTCAGACGTGTGGTGGGGCGGAGCGGAGGCTGATTACACCGAGAACAGcatgaCTCGTGATGCCGCAGCGGAGCCGGCGGTGCTGGAGGATGATGAGGATGCGGACGAGGAAGAGGACGAGGATCAGGATGGAGATGGAGATCGGGACGAGAAGatagaggaagaggaggaggaggaggagcgcaCCCAGAGCACCAGCGCAGCCCTGacctccaccaccaccaccaccactgaGTCTGTAGAGGAGGTGGTGCGAGTGCCGACTCCATCCTCCAGCCCTCCGGATGCAGTGGACCGATATCTGGAGACGCCGGCGGACGAGAACGAACACGCTCACTTTCTACAGGCCAAAGAAAGTTTGGAGACCAAACACCGCGAGCGCATGTCTCAGgTGATGAGGGAATGGGAAGAGGCCGAGAGACAGGCCAAGAGTTTACCACGCAACGACAAGAAGGCCGTGATCCAGcACTTCCAGGAGAAGGTGGAGGCTCTGGAGCAGGAGTCGGCCAGCGAGCGTCAGCAGCTGGTGGAGACACACATGGCACGGGTGGAGGCTCTGCTGAACGACCGCCGCCGCCTCGCCCTCGAGAGCTACCTGTCTGCCCTGCAGGCCGATCCACCACGGCCTCGTCATGTGTTCAGCCTGCTGAAGAAGTATGTACGGGCCGAGCAGAAGGACCgtcaacacacactcaaacacttcGAACACGTGCGCATGGTGGACCCCAAGAAAGCAGCACAGATACGGCCTCAGGTACAAGAGCATTTGAAATGTGATGAACACGTTATTCACactggtaTGATGGTTGTGTTCAGAATGACGGGACTCGCGAGAGgtgtgtgtgtgtgtgtagagctgCTGCAGCGTGAGCAGCAGGAGATGTCCGCTCAGTTGGCGAATCTGCAGAGTGACGCGCGTGTGAGTTATGGGAACGATGCGCTGATGCCCGACAGCACCGCCGGCCTGGAGCTGCTGCCCGCCGAGGACACACAGGGGTTCGGCTTCATACACCCCGAGAGCTTCAACCAGCCCAACACACACAACcaggTTGAGCCTGTCGATGCCCGACCTGTTCCAGACCTAGACCTGGCAACCCGACCAGTGTCTGGACTGAAGCCTGATGACATTCCTGAGCTGCGGATGGAAGCTGAAGAGAGACACAGTGAAGTCTACCACCAGAAGCtgGTTTTCTTTGCGGAGGACGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGCGTCGTCATAGCAACCATCATCGTCATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGCATCATCGAGGTGGACGCGGCCGTGACTCCAGAGGAGCGTCATCTGTCTAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTTGAGCAGATGCACAACTGA
>TCONS_00001477
ATGCGGTCGAGGGAGCTCTTCATATTACTGATGGCCGTCGCGTCGACGCTCGCGGTGGAGGTGCCGTCAGACTCCGGGACGGGGCTTCTGGCCGAGCCACAGATCGCCATGTTCTGCGGGAAACTCAACATGCACATCAACATCCAGAGCGGGAAATGGGAGCCGGATCCGTCCGGAAGCAAGAGCTGCATCGGGAATAAAGAGGGAATCCTGCAGTACTGCCAGGAGgTGTATCCGGAGCTGCAGATCACCAATGTGGTGGAGGCCAATCAGCCGGTCAGCATCTGGGACTGGTGTAAGAAGAGCCGCAAGCAGTGCCGCAGTCACATGCACATCGTAGTGCCGTACCGCTGCCTGGTTGGGGAGTTTGTCAGCGATGCTCTGCTGGTTCCTGATAAGTGTAAGTTCCTGCATCAGGAGCGCATGGACATGTGTGAGAGTCACCTGCACTGGCACACCGTCGCCAAAGagTCGTGTGGTGACCGCAGCATGAATCTGCATGATTATGGGATGCTGTTGCCGTGTGGAATTGACCGTTTCCGGGGTGTGGAGTTCGTGTGCTGTCCTGCAGACGCGGGTAAAGAGTCTGAGAGCGCCGCTGTGGAGGAGGACGATTCAGACGTGTGGTGGGGCGGAGCGGAGGCTGATTACACCGAGAACAGcatgaCTCGTGATGCCGCAGCGGAGCCGGCGGTGCTGGAGGATGATGAGGATGCGGACGAGGAAGAGGACGAGGATCAGGATGGAGATGGAGATCGGGACGAGAAGatagaggaagaggaggaggaggaggagcgcaCCCAGAGCACCAGCGCAGCCCTGacctccaccaccaccaccaccactgaGTCTGTAGAGGAGGTGGTGCGAGaggtgtGTTTTGCGAGTGCAGAGACGGGTCCCTGTAGGGCCATGTTGTCCCGCTGGTATTATGTGCGTGAGGAGCGCCGCTGTGCGCCCTTCATCTACGGCGGCTGCGGAGGAAACCGTAATAACTTTGAGTCGGAGGAATACTGTCTGTCCGTCTGCAGCGGTGTGTTGCCGACTCCATCCTCCAGCCCTCCGGATGCAGTGGACCGATATCTGGAGACGCCGGCGGACGAGAACGAACACGCTCACTTTCTACAGGCCAAAGAAAGTTTGGAGACCAAACACCGCGAGCGCATGTCTCAGgTGATGAGGGAATGGGAAGAGGCCGAGAGACAGGCCAAGAGTTTACCACGCAACGACAAGAAGGCCGTGATCCAGcACTTCCAGGAGAAGGTGGAGGCTCTGGAGCAGGAGTCGGCCAGCGAGCGTCAGCAGCTGGTGGAGACACACATGGCACGGGTGGAGGCTCTGCTGAACGACCGCCGCCGCCTCGCCCTCGAGAGCTACCTGTCTGCCCTGCAGGCCGATCCACCACGGCCTCGTCATGTGTTCAGCCTGCTGAAGAAGTATGTACGGGCCGAGCAGAAGGACCgtcaacacacactcaaacacttcGAACACGTGCGCATGGTGGACCCCAAGAAAGCAGCACAGATACGGCCTCAGGTACAAGAGCATTTGAAATGTGATGAACACGTTATTCACactggtaTGATGGTTGTGTTCAGAATGACGGGACTCGCGAGAGgtgtgtgtgtgtgtgtagagctgCTGCAGCGTGAGCAGCAGGAGATGTCCGCTCAGTTGGCGAATCTGCAGAGTGACGCGCGTGTGAGTTATGGGAACGATGCGCTGATGCCCGACAGCACCGCCGGCCTGGAGCTGCTGCCCGCCGAGGACACACAGGGGTTCGGCTTCATACACCCCGAGAGCTTCAACCAGCCCAACACACACAACcaggTTGAGCCTGTCGATGCCCGACCTGTTCCAGACCTAGACCTGGCAACCCGACCAGTGTCTGGACTGAAGCCTGATGACATTCCTGAGCTGCGGATGGAAGCTGAAGAGAGACACAGTGAAGTCTACCACCAGAAGCtgGTTTTCTTTGCGGAGGACGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGCGTCGTCATAGCAACCATCATCGTCATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGCATCATCGAGGTGGACGCGGCCGTGACTCCAGAGGAGCGTCATCTGTCTAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTTGAGCAGATGCACAACTGA
>TCONS_00001479
TGTCCCGCTGGTATTATGTGCGTGAGGAGCGCCGCTGTGCGCCCTTCATCTACGGCGGCTGCGGAGGAAACCGTAATAACTTTGAGTCGGAGGAATACTGTCTGTCCGTCTGCAGCGGTGTGTTGCCGACTCCATCCTCCAGCCCTCCGGATGCAGTGGACCGATATCTGGAGACGCCGGCGGACGAGAACGAACACGCTCACTTTCTACAGGCCAAAGAAAGTTTGGAGACCAAACACCGCGAGCGCATGTCTCAGgTGATGAGGGAATGGGAAGAGGCCGAGAGACAGGCCAAGAGTTTACCACGCAACGACAAGAAGGCCGTGATCCAGcACTTCCAGGAGAAGGTGGAGGCTCTGGAGCAGGAGTCGGCCAGCGAGCGTCAGCAGCTGGTGGAGACACACATGGCACGGGTGGAGGCTCTGCTGAACGACCGCCGCCGCCTCGCCCTCGAGAGCTACCTGTCTGCCCTGCAGGCCGATCCACCACGGCCTCGTCATGTGTTCAGCCTGCTGAAGAAGTATGTACGGGCCGAGCAGAAGGACCgtcaacacacactcaaacacttcGAACACGTGCGCATGGTGGACCCCAAGAAAGCAGCACAGATACGGCCTCAG

Function

symbol description
appa Predicted to enable heparin binding activity; serine-type endopeptidase inhibitor activity; and transition metal ion binding activity. Acts upstream of or within central nervous system development; convergent extension; and vasculature development. Predicted to be located in Golgi-associated vesicle and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; nervous system; pleuroperitoneal region; segmental plate; and solid lens vesicle. Human ortholog(s) of this gene implicated in APP-related cerebral amyloid angiopathy; Alzheimer's disease; Alzheimer's disease 1; cognitive disorder; and visual epilepsy. Orthologous to human APP (amyloid beta precursor protein).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0060026 convergent extension biological_process
GO:0001944 vasculature development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko00740 Riboflavin metabolism

ZFIN:

id description
ZDB-GENE-000616-13 Predicted to enable heparin binding activity; serine-type endopeptidase inhibitor activity; and transition metal ion binding activity. Acts upstream of or within central nervous system development; convergent extension; and vasculature development. Predicted to be located in Golgi-associated vesicle and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; nervous system; pleuroperitoneal region; segmental plate; and solid lens vesicle. Human ortholog(s) of this gene implicated in APP-related cerebral amyloid angiopathy; Alzheimer's disease; Alzheimer's disease 1; cognitive disorder; and visual epilepsy. Orthologous to human APP (amyloid beta precursor protein).

Ensembl:

ensembl_id ENSDARG00000104279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001474 False 4339 mRNA 0.40 5 617620 625875
TCONS_00001475 False 796 lncRNA 0.45 3 620990 622179
TCONS_00001476 False 768 processed_transcript 0.47 5 621025 625080
TCONS_00001478 False 2049 mRNA 0.58 18 621374 656693
TCONS_00001477 False 2217 mRNA 0.58 19 621374 656693
TCONS_00001479 True 620 mRNA 0.60 5 626550 633356

Neighbor

gene id symbol gene type direction distance location
XLOC_000922 atp5pf coding downstream 2982 610082 ~ 614638 (-)
XLOC_000921 CU571081.1 coding downstream 59360 552275 ~ 558260 (-)
XLOC_000920 si:ch73-41e3.7 coding downstream 93187 518853 ~ 524433 (-)
XLOC_000919 trmt10c coding downstream 103834 508885 ~ 513786 (-)
XLOC_000918 ercc5 coding downstream 123340 474085 ~ 494280 (-)
XLOC_000924 cyyr1 coding upstream 1712 658405 ~ 669717 (-)
XLOC_000925 adamts1 coding upstream 16470 673163 ~ 681116 (-)
XLOC_000926 adamts5 coding upstream 35045 691738 ~ 714626 (-)
XLOC_000927 NA coding upstream 121882 778575 ~ 779614 (-)
XLOC_000928 gart coding upstream 303516 960209 ~ 999556 (-)
XLOC_000907 FP067451.1 non-coding downstream 469774 108285 ~ 147846 (-)
XLOC_000929 NA non-coding upstream 349244 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 394248 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 487269 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 634482 1291175 ~ 1315753 (-)

Expression


Co-expression Network