XLOC_000924 (cyyr1)


Basic Information

Item Value
gene id XLOC_000924
gene name cyyr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 658405 ~ 669717 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001480
CCAGACAAAGAGGAAGAGCTGGACACGTGCAGCCCTTAGAGGATATGCGGGAACTTTTCTGACTCTCTGAACTGTTGCTTTCGACTGCAGTCATGGCTGAGGTATCGATGCACTGCGGGAAGAGGAAGAAGTAGCGCGGGAAAGAGTGTTTAGATGCGGAGTTTTCCTGAAATAAGCGGATTATGGAGAATCCCAGAAGTGCGAGTTTACAGAAGAGCTGGAAGTTCGTGCGGGAGTCGCTGCTGCTCTGCTTAATCGCCGgtcgtGGAGAGGCTCAGTGTGACGGCTGTATTGAGTACTGCTGTGATGGAGTTCCTCCGTTCTGCTGCTCATATTATGCTTATGTGGGAGATGTGCTGTcAGGAACGGCTATCTCCGGGATCGTGTTCGGTGTTGTGTTTCTGATGGGAGCAGTGGCCGCTGTGTTTCTGTGCGTCTGCATGTGTGTGAAGAACAGCCGCGGGTCCAGAGTCGGAGTTTTCAGTTCCACATACATCAACACAGTGACTCAGGGTTACCCAGgtcctcctcctcctccttacAGTTATGATCATGAGATGTTTCCTCCTGATCTCCGTCCTCCTCCATACACACCCACTGTTCCCAGATCAGCAAACTACTCTCCACCTCCACCATACCCTGGATTCAGCAGGAAGTGACCATGACCATTTCCAGACCTGAGGCCAGACGCTGacctgctgcacacacacacacacacacacacacattaatgcaGTGCACATGTAGGCTGTAATAATAGCCATACATTAGCAGTTTTACCCAGTTTGTGATTAATTTTTtccaatttattcatgtttttgagttgcattatgggatcttgatctttcttctgacGACTGTTAAGCCTAAATAGTTGCAAAAAGTGGGTTTTCTGACCATTTGTAATAgtctgcagtgctatattgtctatgattgagctttatgacatgctgcgttatcctgctggaagtagccatcagaagatggagacactgtgctcataaagggatggacatggtcagcagcaatactcaggtaggctgtggcgttgatgctcaattggtactaatggacccaaagaaaatctcccccacaccattacaccaccaccaccagcctgaaccgctgatacaaggcaggatgatccatgctttcatgttgttgatgccaaattctgacccgagcatccgacagcagaaatggagactcatcagagcagcaacgtttctccaatcttctattgtccagttttggtgagtctgtgtgaattgtagcctcagtttcctgttcttagctgacaggagcggcacccggtgtgctcttctgctgctgtagcccatccgcctcaaggttggccgtgttgtgtgttcagagatgctcttctgcagagctcggttgtaacgagtgcttatttgagttactgttgcctttctatcagctggaaccagtctggccattctcctctgacctctgaccatcaacaaggcatttgcgcccacagaactgccgctcactggatatttcctctttgtcggagcattctctgtaaaccctagagatggttgtgcgtgaaaatcccagtagatcagcagtttctgaaatactcagagcagcccgtctggcagcaacaaccatgccacgttcagagtctcttaaatcccctttcttccccattctgatgctcgctctgaactgcagcagatcctcttgaccatgtctacatgcctaaatgcagtgagctgctgccatgtgattggctgattagacatttgcattaacagcagttggactggtgtacctaataaagtggccggtgagtgtatttctctatatattatgtCTTATATATTATTACTCAATGactaaatgtcagtaaaagtcactttgttaaactgtagagttgaattttcaacatcagaagtggacagagcagagataagcatcccataatgcaaatcaccaccacacataaacacaaaatatggaaattGTCTTATATTGACAGTGTGCATTCTGGGAAATGCAGTAGACTCTGTGttaggggtctggctgcagacctggtgcagtgcaatctgagctgcatccaatgctttttattgggctcacctaactccacccctaaccctacccgtcacagtgacgtcactcgctccattaagtgcattgtgtctgagaatgcatcgctgagtgatgcaatttcAGCGTGCATCGTacaggctgcatccagatactattgggaaATGCAGTAGACTCTGTGTAGACTCAGTGTTATTTCTGTCATGATCAATGAAATGTGTATATAGATTAACATTATGTTCTTGTGTTTCTGTCCGAGTGGTTTCTGCTCTGGAAATAATTCGCTTTATTAAtgcagaaaatgtatttattcgcTTGCATATTTGTTTGGAAGCTCTAATATCAGTGTTTTTATAGTGTGCAGATTTGTCTTTGTATTTGTGAGcagtaaaattaaaacaaagggtggcacggtggctcagtggttagcactgtggcctcacagcaagaagctcgctggttcgagtcccggctggaccagttggcatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttccgccgggtgctccggttacagtccaagcacatgtgctataggggaattgatcaactcaattggccgcagtgtatgagtgtgtgtgtgtatgcatgcgtgcgtgtttcccagtactgggttgtggctagaagggcatctgctaaataaaacacatgctggactagttggcagttcattccgctgtggtgaactctaatgaataagggactaagccaaatgaaaacaAGCAAATGTGGTTGACCTGTTTTTAAAACTTGTGCTCAAAtagtaaagcatctgtttttgaattttaataataataaaactgaaatcTCCTTTC

Function

symbol description
cyyr1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including female organism; head; lateral line system; male organism; and pectoral fin. Orthologous to human CYYR1 (cysteine and tyrosine rich 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2356 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including female organism; head; lateral line system; male organism; and pectoral fin. Orthologous to human CYYR1 (cysteine and tyrosine rich 1).

Ensembl:

ensembl_id ENSDARG00000103783

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001480 True 2928 mRNA 0.46 4 658405 669717

Neighbor

gene id symbol gene type direction distance location
XLOC_000923 appa coding downstream 1712 617620 ~ 656693 (-)
XLOC_000922 atp5pf coding downstream 43767 610082 ~ 614638 (-)
XLOC_000921 CU571081.1 coding downstream 100145 552275 ~ 558260 (-)
XLOC_000920 si:ch73-41e3.7 coding downstream 133972 518853 ~ 524433 (-)
XLOC_000919 trmt10c coding downstream 144619 508885 ~ 513786 (-)
XLOC_000925 adamts1 coding upstream 3446 673163 ~ 681116 (-)
XLOC_000926 adamts5 coding upstream 22021 691738 ~ 714626 (-)
XLOC_000927 NA coding upstream 108858 778575 ~ 779614 (-)
XLOC_000928 gart coding upstream 290492 960209 ~ 999556 (-)
XLOC_000929 NA coding upstream 336220 1005937 ~ 1014866 (-)
XLOC_000907 FP067451.1 non-coding downstream 510559 108285 ~ 147846 (-)
XLOC_000930 CU611053.1 non-coding upstream 381224 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 474245 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 621458 1291175 ~ 1315753 (-)

Expression


Co-expression Network