XLOC_000926 (adamts5)


Basic Information

Item Value
gene id XLOC_000926
gene name adamts5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 691738 ~ 714626 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001482
ATGTGGCTGGTGGTTTTGTTGTGTTGCGTTTTGGACGCCTCCGTTGCGCGTCCACCTGCGAACGCGTCTCTGCTCGCACCTGACGGAACCGTGCGCGCGGTGGACCGGATTTATCACGGGGGAGGAAAAGCCGGGTATCTTCTGTATCTGGACGAGCAGCGCTTTCAGCTGGATATGGAGCGGGATGAAACGATACTGGATCATCAGTTCAGCGCTGACGCGCCGCCGCGCAGGGAATGCGTTTACCGCGGGACCGTCAATTCAAACGCACAATCTCTAGCTGTTTTTAACCTGTGTGGTGGCGGGCTTGAAGGGTTTTTCGCGCTTGATCACTCCCGGTACACCATCACTCCTGTTATCCGAGCGAAAGGGCACGAGAATGACGTGCATATAGTCGAGGACGCCGACGCGACGCGCGCGCTTCATCTCTACACCCGGGAGCGCTTCAGTTTCGAGGCGATGCCTGAGCGGCACAGCTGCGGCACGCGGGACCGGAAAACGCGCAAGCACAAAAAAGAAAAGCACGGGCGCAGATGGTGGACAAAGTTTATCAAACCTGACGCTTCGCCGACGCGACGCAAACGCTCTGTGTCGCGCGCGCGGCACGTGGAGCTGCTGCTGGTCGCTGATGCTTCCATGACGAAGAAATACGGGAAGGACTTACAGCACTACCTGTTGACGCTCGCGTCCATCGCGTCCAAACTCTACGGTCACGCGAGCATCGAGAACCCCATCCGGCTGTCGGTGGTGAAAGTGGCGCTTCTGTCCGAGCACGAGAAGGGCATCGAGATCTCCAAAAACGCGGCCGCGACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCTCTGGATGACGATCATCAGCATCACCATGACGCCGCGATCCTCTTCACCAGGCAGgatcTGTGCGGGCATCACTCGTGTGACACTCTGGGCATGGCGGATGTAGGAACTGTGTGTTCGCCAGAGAGGAGCTGTGCTATCATTGAGGACGACGGCCTGCACGCTGCCTTCACTGTGGCTCATGAGATCGGTCACCTGCTGGGTCTGTCCCACGACGACTCCAAGTTCTGTGAGGAGCGTTTCGGCTCCAGCGAGGACAAGCGGCTGATGTCCTCCATCCTGACCTCCATCGACGCCTCCAAACCCTGGAGCCGCTGCACCTCCAACACCATCACCGACTTCTTCGACGACGGAAACGCGGAGTGTCTCCTGGACGCTCCCCGTGTTCCTCTGCTGGGGCCGGAGGAGCTGCCGGGTCAGAGTTACGATGCGGTGCAGCAGTGCCGTCTGGCGTTCGGCTCCGAGTACAGTGTGTGTCCCGGGATGGACATCTGCGCTCGGCTGTGGTGCTCCGTCATCAGGAAGGGTCAGATGGTGTGTCTGACCAAGAAGCTGCCCGCTGTTGAGGGAACGCCATGTGGGAAGGGCAGGATCTGTCTGCAGGGCAAATGTGTGGACAAAACCAAAAAGAGACACTATTCGACATCTAAAGACGGCAGCTGGAGTTCGTGGGGAGCGTGGGGTTTGTGTTCTCGCTCGTGTGGTGGCGGCGTTCAGTTCGCGCAGCGGCTCTGCAATAATCCTGCACCCCGAAACAACGGACGATACTGCACCGGGAAAAGAGCTGTGTACAGATCCTGCAGCGTCACACCCTGCCCCACCacagGTAAGAGTTTCCGGCAGGAGCAGTGTGAGGTGCGTAACGGCCCCCAGACGGACCCTAAAGGCGTGAAGACGCTGGTGGAGTGGGTCCCCAAATTCGCCGGCGTTCTTCCCAAAGACGTGTGCAAACTCACCTGCAGAGCCAAGGGAACCGGATATTATGTGGTGTTTTCACAGAGGGTTGTTGACGGGACTGAGTGTCGTCCGTACAGCAGCTCGGTGTGTGTGAAGGGGAAGTGTGTTCGCACCGGCTGCGACGGCATCATCGGATCCAAACTCCAGTACGACAAGTGTGGGATCTGCGGAGGAGACGGAAACAGCTGCATTAAAGTGGCTGGAAACTTCACCAAGAAGAGTAAGGGCTACACTGACGTGGTGAAGATTCCCGAGGGTTCGACTCATCTGAAGGTGCGTCAGTATAAAGCTAAAGGCCAGTCGCGCTACACAGCATACCTAGCGCTGCGGCGACCCGGCGGAGATTATCTGCTGAACGGCAAACTGATGATCTCCACCTCTGAAACCATCATCCCGCTCAACGGCTCTGTCCTCAACTACACCGGCTGGAGCCAGCGGGACGAGGCTTTCCACAGCATGGGCCCCGCCGCCCTCCAGGAGAGCCTGTTAGTGCAGATTTTATCCACCGATGCTAAAAAACCGCTGGATATACGCTACAGCTTTTTCATGCCTCGCAAAACGCCACTCCCAGCCAGGACCTCCCCTGAAGCTCCGCCCAGAATGTCGCTTGAAGCTCCGCCCAGAATGTCACTTGAAGCTCCGCCCAGGATGTCACTTGAAGCTCCACCCAGGATGGCTCCTGAAGCTCTGCCCAGGACATCCCCAGAAGCTCCGCCCAGAATACCACCTGAAGCTCCACCTAGGACGCCTCCTGAAGCTCCGCCCACTGTCGCTTCTTTATCGTCAGCAGAACTTGTAACGTTTACATCTGACGTTCCTCCAACGACGGAGAGTCCGAAATTCCCGCGCTGGCTGACGGGCCCCTGGATGAGCTGCTCCAGAACTTGCGATACGGGCTGGCAGAGTCGCACAGTTCAGTGTAAAGACGCTAACGGGAAACTGTCTAAAAACTGCCCGCTCAGCGCCCGGCCGTCAGCCTTCAAACACTGCCTGATTAAAAAGTGTTGA

Function

symbol description
adamts5 Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus.

GO: NA

KEGG:

id description
ko01002 Peptidases and inhibitors

Ensembl:

ensembl_id ENSDARG00000100307

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001482 True 2814 mRNA 0.58 8 691738 714626

Neighbor

gene id symbol gene type direction distance location
XLOC_000925 adamts1 coding downstream 10622 673163 ~ 681116 (-)
XLOC_000924 cyyr1 coding downstream 22021 658405 ~ 669717 (-)
XLOC_000923 appa coding downstream 35045 617620 ~ 656693 (-)
XLOC_000922 atp5pf coding downstream 77100 610082 ~ 614638 (-)
XLOC_000921 CU571081.1 coding downstream 133478 552275 ~ 558260 (-)
XLOC_000927 NA coding upstream 63949 778575 ~ 779614 (-)
XLOC_000928 gart coding upstream 245583 960209 ~ 999556 (-)
XLOC_000929 NA coding upstream 291311 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 coding upstream 336315 1050941 ~ 1051057 (-)
XLOC_000931 NA coding upstream 429336 1143962 ~ 1253194 (-)
XLOC_000907 FP067451.1 non-coding downstream 543892 108285 ~ 147846 (-)
XLOC_000932 NA non-coding upstream 576549 1291175 ~ 1315753 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_05478688_05502027 ADAMTS5 coding CI01000299 null 5477482 ~ 5503268 (-)
bowfin (Amia calva) AMCG00014100 NA coding CM030128.1 CM030128.1 1799682 ~ 1813298 (+)