XLOC_000927



Basic Information


Item Value
gene id XLOC_000927
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 778575 ~ 779614 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00003289
AAACAGTTCAGAGCACGGACAGACTTCGCTAGCATCACATTGTTATTGCCGAGTGCATTCAAATACAAAACCACTCATATTAAGCTACACTTCAAAGCATTGTGCTGCTCTGCTGTACTTCCAAATCCAAGGACTGTAAACTCTCAACCAGtatctgtttattaaagtgtTCTTCGTCTCTGACCGGACGACTTATGTCTGCTCAATTTCCACCAGCACCCACACTAGTCTACATTACAaatggtccttcgagccggagttaATGAGCTGTCATAAGAATGATGTATCAGAGTGATCCAGAGCCAGCAATCAGACCCAGAAGAGTGGTGCGACTACCTAGTTACCTGGCAGATTTCGAGCTTACTGATCATCAACAGAGTTTACAGTCAGAACAGAGAGCACACACATCCTCAGAGTGGAGTGATGATTCCAGATTGCAAGGAGCTGCTGCATTACCGCTTGTTGACTATGGGGCCAGTATGCAGACAACAGAGCAGTTGATAGAGTGGAGTCCCAGCAATAGAGAGCATGAACAACAACG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00003289 True 541 lncRNA 0.45 2 778575 779614

Neighbor


gene id symbol gene type direction distance location
XLOC_000926 adamts5 coding downstream 63949 691738 ~ 714626 (-)
XLOC_000925 adamts1 coding downstream 97459 673163 ~ 681116 (-)
XLOC_000924 cyyr1 coding downstream 108858 658405 ~ 669717 (-)
XLOC_000923 appa coding downstream 121882 617620 ~ 656693 (-)
XLOC_000922 atp5pf coding downstream 163937 610082 ~ 614638 (-)
XLOC_000928 gart coding upstream 180595 960209 ~ 999556 (-)
XLOC_000929 NA coding upstream 226323 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 coding upstream 271327 1050941 ~ 1051057 (-)
XLOC_000931 NA coding upstream 364348 1143962 ~ 1253194 (-)
XLOC_000932 NA coding upstream 511561 1291175 ~ 1315753 (-)
XLOC_000907 FP067451.1 non-coding downstream 630729 108285 ~ 147846 (-)
XLOC_000933 CZQB01066256.1 non-coding upstream 570497 1350111 ~ 1352997 (-)

Expression



Co-expression Network