XLOC_000929


Basic Information

Item Value
gene id XLOC_000929
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1005937 ~ 1014866 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003290
CGAGTCCCAGCAGCCAATGAGAGCACTGCATGATAGTCATGAGCGCCAATAGAAGAACCAAAACAAACCGGAGCCTGTCAGAAGGAAGCGAGCGGAGTTTCTCCGGTGAAGTGCACAGATGGAGGTGTGCCAGTCTGCGGTGGAGAACCCCCCTGTGCAGGACTCTGAGCAGGCGGAGGTCCAGACGGCGATGCTGTGGAGCATCCAGGAGGCGGTGCAGAGGCAGACGCTGCAGATCGGGGTGTCTGCGTGCGGAGCGACCGCTGTGGTGGACGTCCTGCAGGCGCTTGGCATCTCCGTGAGCCCAGAGACGGTCAACCACTGCGTCAGGACCAGTCTGAGGAGGAATGAGGCGCCTCTGCATGATTATCTGCACTCGCGGAGCACGGCTGGAGCAACGCACCAGCAGCTGATATGCGGAGCGGATCAGGCCAGCGGCGGACGTGTCATTGGTCGATTCTTTGCTCTGCATCCTCGCCGGCGAGTAAAGCTGGTACCATGGTTAGCGCGCTGGATTCTGCGCGGAGCCGTTCCCGTCGCCACTATGAACATGCAGAGAGCTGTTCCTGAAGGAGAGGAGATACCCGACGCCTGGCATCACCAGCTTATCTTCGGAGTTGGACCAAGTGCTGTCTTCATGACCAACCCTCTCGACGTAGTGAGTGAAGAGGAGGTTCATGAGCGTCTGTGCAGTGAGTCTGTGCTGCTCATACGACGGGAGGATATTCTGAAGAGACTCACGCCTGACGTTCAGCTGCCACAGATCTCACAGCAGCATCCGGACTCGCGCTGGAAAACACTTGACGTGGAGGGTCAGGTCCACCAGATGATCAGTGAGGAAGCGCAGGCTGATGATGTCCGTCAGAAAACTCCTCATCTGCTGATTCCAGCGGCGTACAGCTCCGGCGTCACTTTCTTTGCTCTCAGAGACTCTGCTGTGGGTCAGGAGCTGCTCAGCACTCCAGATCTGCCTCCCCTGTGAACATCACACCCTCCATCCACTGACTGCTGACTCTGGATCAGTGCTCCTCTGCTTTTATTCTCTGGATTTTACATAGATGTCGTCGTCATCCTGCTCCGTTTTCATGCTAACAGTGTTCTGTTTATTTTGAGAGAGGTTGAGGATTTGGGTTTATCCAGTAAATGTAGTGATGTGCAAAGACTGAATTGCATCcaaaattaaagtttgtatttacatataccACAGGGCtgatgaatgcttgattctgattggctgatgatcactctaaggtgtttggttattgtcagataaaggcactgctaaagtagttccggcaggtttagagtgcattacagctccatatcactccgctgaatgattagAGCTATTTCACTGCTACAGCAGTTAGAAATCACAACAgtaggaggaggaggagatgtggaggactctagtgctacacacaggagACGTTTGAGGACGACACACACCTCACAAATACACTCTAAGCATACAACATCTGAATAATGGATTTATTGCTGTACTGGAGACCAGAGGAGAAGAGTACTAACCACCTTGTGTGTGCATTGTTTCTAAAAATTCAACAGCCTGTCATCAACttcttaaattatttatatatataaaatatatatgtatatatatatatatatatatatatatatgtatatgtgtgcatgtatatattcacatttatatGTACACagtgcacacacatatattatgtaaatacaattttttttattctggatgcAATTAATCTAGTTTAGTCTTTGCACCACACTAAATAACAGACAAGAAATGTCTAGATCATGTACTGCATGAACTGCCATGATGCATATACCAccacaaatcattttaaaattatgtaatacACCAAGTATTAATATGAATTGTTCAAAAAACTTGAAGTTTTAGAGACGAACTTtagtgtttatgtatttttatttgtaattaatccAAATATCTGTTCAGAAAATGTTCATTAGGCTAACATTTCACCCATTTTAAGTGAGTTTGAAGTCATGCAGTTCTTGAATTCTTTATTGGAATTTTTAAAGCAGACCATTTTGGAAACCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003290 True 2058 lncRNA 0.46 5 1005937 1014866

Neighbor

gene id symbol gene type direction distance location
XLOC_000928 gart coding downstream 6381 960209 ~ 999556 (-)
XLOC_000927 NA coding downstream 226323 778575 ~ 779614 (-)
XLOC_000926 adamts5 coding downstream 291311 691738 ~ 714626 (-)
XLOC_000925 adamts1 coding downstream 324821 673163 ~ 681116 (-)
XLOC_000924 cyyr1 coding downstream 336220 658405 ~ 669717 (-)
XLOC_000930 CU611053.1 coding upstream 36075 1050941 ~ 1051057 (-)
XLOC_000931 NA coding upstream 129096 1143962 ~ 1253194 (-)
XLOC_000932 NA coding upstream 276309 1291175 ~ 1315753 (-)
XLOC_000933 CZQB01066256.1 coding upstream 335245 1350111 ~ 1352997 (-)
XLOC_000934 runx1 coding upstream 348066 1362932 ~ 1402303 (-)
XLOC_000907 FP067451.1 non-coding downstream 858091 108285 ~ 147846 (-)
XLOC_000935 NA non-coding upstream 477075 1491941 ~ 1499393 (-)

Expression


Co-expression Network