XLOC_000931


Basic Information

Item Value
gene id XLOC_000931
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1143962 ~ 1253194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002897
gtgCAAAATGAGTGTTTTCAACAGTGATGTGTGACCTGTTCTTGATAGGTTGAAACGAGACTCGCATttcagagccacacacacacagagagagagagagagagagagagagagagagagagagagagagagctgctgGATGCGATACTTTGATTCTGCTCACTGAGGTTTCAACTCGCGACACAAGCGGCTGTCCGTCACTTGCACCTGCTGAAAATGATcctcaaacacacctgtctgctCGGATTGCTGCTCTGCGGCTGTCAAGGTAAGTCATCTCTTATTATTCTCCTCATGACGTGGCCTAATGATcaacaacacaacaacattagCGCTGATCTGCTGTCAGTGTTGCGTTGAGTGAACTCGGTCTGAGAGCGATGCTAAAAAACCAGCTCATGAAAAATGAAGACGAATGTGTCGGATGGGAGATAATGCGTTTTAGATGTGTTTGTTCTGcgcttgatgttgactgatttggcTGTTCATAAATCAGTGAGGGTTATGAGTGAGAGACGTGTTCATTCGCTCATGTTCACTGATCAGGGAACTCTTGCTGTTATCAGAATCTGAATGAGCTTTGCTTGACTTGTGTGTGCAAATACACAACAGTCTTTTTGGGGGGGTTTACTGCTGCTCAGggtacatacagtgctcagttTTAGtgtgtaggggtgtttcccagtactgggttgcagctggaagggcatccactgcgtaaaacatgctgaaatagttggcggttcattccgttgtggtgacccctgctaaataagggactaaaccgaatgaaaatgaatgtatgaatgttttAGTGCATAAAGATCTGTAAACTGCcttcaaacaaacaaagggaTCCGTCTGTGTGTCTAATTCTCTGCACATCTCCATGCACAGTGTATCTACACTCTTCCAGATTCCCGCTGTCCGTGGAACACTTCGGATCTGGCTGGAAGTGTGAGATACACAGCACAAGTGAAAGTGGGTTAGTCTGTATTGTGCTGTAAATTGGATTTGAAAAATAACTCTTGAAAAGAGGTCACATCTCTTTTGAGGAGATTTTACAGTACGCCTCGTAACGTTCAAAGGCATGAAGATAATAAGCCTTACTTTTACTGACCCGTGCTCAGTGATATCTGTATTTCATAAACAGATCttatgtttgatttttattttaatgaaatcaCAACAAACACTTTCTTAATACTTTCAAATGTGTTACAAACTTGCTTTGCAATCAACAAACTTTGATTGGTTGACGTGCATTTGCTCATTTGATTATGAATATCTACcttttaaatactatttagagcagaggaataaataaatgaatgaataaataaataaataaataaataataaataaataaataaataaacaaaagtgcaaaaacaaataaatgaacaaatagacaaacaaatgcatgaataaacaaataaaatattagtgcagaaacaaacaaatgaacgcaAATGTAGCAAATAAACGcatgacaacataaaaaaatcattagtgcaaaaataaataaataaatgaacaaacaaataaacacataaatgaatgaataaataattaaataaataaattcaaatgctCATTGGATTATGAATATCTACCTTTTGATTACTATTTAGAgcagaagaataaataaataaataaataaaaacattagtacaaaaataaataaataaatgaacaaacaaataatcaaataaatgaacaaacaaataaacaaattaataaataaaaacattttgcaaaaaaataaacaaataaacaaacaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002897 True 1786 lncRNA 0.36 2 1143962 1253194

Neighbor

gene id symbol gene type direction distance location
XLOC_000930 CU611053.1 coding downstream 92905 1050941 ~ 1051057 (-)
XLOC_000929 NA coding downstream 129096 1005937 ~ 1014866 (-)
XLOC_000928 gart coding downstream 144406 960209 ~ 999556 (-)
XLOC_000927 NA coding downstream 364348 778575 ~ 779614 (-)
XLOC_000926 adamts5 coding downstream 429336 691738 ~ 714626 (-)
XLOC_000932 NA coding upstream 37981 1291175 ~ 1315753 (-)
XLOC_000933 CZQB01066256.1 coding upstream 96917 1350111 ~ 1352997 (-)
XLOC_000934 runx1 coding upstream 109738 1362932 ~ 1402303 (-)
XLOC_000935 NA coding upstream 238747 1491941 ~ 1499393 (-)
XLOC_000936 NA coding upstream 302102 1555296 ~ 1583206 (-)
XLOC_000907 FP067451.1 non-coding downstream 996116 108285 ~ 147846 (-)
XLOC_000938 NA non-coding upstream 478323 1731517 ~ 1736564 (-)

Expression


Co-expression Network