XLOC_000932


Basic Information

Item Value
gene id XLOC_000932
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1291175 ~ 1315753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003292
tttttgcatgtaAACTCTTCAATTCGTTCACACAAGTGGCGGTTGCTGTTGGTGAGGACTATACATATCACCGTGGACCATGGCTTCAGCTAACAACTAATTCTAAAAGAAAAGTCAACTACTGTACATCTAGGATGGGCTTTTAGGCTCTGCCAAGCGTTACCGAGGATGCTGTGGAGTGTGATGGCACATATAAGGGAGTCGGTGTGAAAGAGTTGAGCGTATTGTTTGTAGTAAGAGATCCGCCTCGGGCTCGACACATCTCTTTCCTTCCGAGCTGCGGTTCTGATGGGCTTCCAGCTGTCATTAAAGACGCAGGAGAATCACATGAACCTTCGCTGTCCCGCACTCTTACGgatcacatgcacacactctgCTGATAGTCAAAGAGCATTCAGAAGCagcccaacagggaaaaccaaaAACTGACACACACGCGCATACATTCAAACCACTGCTCGAGATGTGTTATTTCAGGAGGGTTTATAATCTTCTGGTGAGCTGGAAAAAGCCTGATGCAATGAATGATGGTGGAGCTGCAAGGTAAACATGACCAAAAAGAGAAAAACTATAAGATTAGTAACATTTTATTAGTCAATTTCTGTGCAGATGCAAAAGTGCTTTGAATAGATTTTGTggaattattcatttgtgttcGAAAAACATCAAACGTCTTGTTTTTCAGTATTGTTATTAACTCTACccgtg
>TCONS_00003291
tttttgcatgtaAACTCTTCAATTCGTTCACACAAGTGGCGGTTGCTGTTGGTGAGGACTATACATATCACCGTGGACCATGGCTTCAGCTAACAACTAATTCTAAAAGAAAAGTCAACTACTGTACATCTAGGATGGGCTTTTAGGtgctgggttgcagatGCAAGGGCATCCACAACATAATCATATTTCAGAgtacttggtggttcattcctctgtggctaCCTCTGAGTCAGGGACTAAACTGAACTCTGCCAAGCGTTACCGAGGATGCTGTGGAGTGTGATGGCACATATAAGGGAGTCGGTGTGAAAGAGTTGAGCGTATTGTTTGTAGTAAGAGATCCGCCTCGGGCTCGACACATCTCTTTCCTTCCGAGCTGCGGTTCTGATGGGCTTCCAGCTGTCATTAAAGACGCAGGAGAATCACATGAACCTTCGCTGTCCCGCACTCTTACGgatcacatgcacacactctgCTGATAGTCAAAGAGCATTCAGAAGCagcccaacagggaaaaccaaaAACTGACACACACGCGCATACATTCAAACCACTGCTCGAGATGTGTTATTTCAGGAGGGTTTATAATCTTCTGGTGAGCTGGAAAAAGCCTGATGCAATGAATGATGGTGGAGCTGCAAGGTAAACATGACCAAAAAGAGAAAAACTATAAGATTAGTAACATTTTATTAGTCAATTTCTGTGCAGATGCAAAAGTGCTTTGAATAGATTTTGTggaattattcatttgtgttcGAAAAACATCAAACGTCTTGTTTTTCAGTATTGTTATTAACTCTACccgtg
>TCONS_00003293
AGCCAATCAGCTTTTATAATTGCACTGCCAGCAGGCATGTCGTTAATGCTtcagtttgttttaaaataaagatgaaatgcagatTATATGATCGCAAAACAAGTTTGACATGGATAAATTATTGACGGAGAGAAAAATGGGGTTTATTTCGACACAGTGGCGGTTGCTGTTGGTGAGGACTATACATATCACCGTGGACCATGGCTTCAGCTAACAACTAATTCTAAAAGAAAAGTCAACTACTGTACATCTAGGATGGGCTTTTAGGCTCTGCCAAGCGTTACCGAGGATGCTGTGGAGTGTGATGGCACATATAAGGGAGTCGGTGTGAAAGAGTTGAGCGTATTGTTTGTAGTAAGAGATCCGCCTCGGGCTCGACACATCTCTTTCCTTCCGAGCTGCGGTTCTGATGGGCTTCCAGCTGTCATTAAAGACGCAGGAGAATCACATGAACCTTCGCTGTCCCGCACTCTTACGgatcacatgcacacactctgCTGATAGTCAAAGAGCATTCAGAAGCagcccaacagggaaaaccaaaAACTGACACACACGCGCATACATTCAAACCACTGCTCGAGATGTGTTATTTCAGGAGGGTTTATAATCTTCTGGTGAGCTGGAAAAAGCCTGATGCAATGAATGATGGTGGAGCTGCAAGGTAAACATGACCAAAAAGAGAAAAACTATAAGATTAGTAACATTTTATTAGTCAATTTCTGTGCAGATGCAAAAGTGCTTTGAATAGATTTTGTggaattattcatttgtgttcGAAAAACATCAAACGTCTTGTTTTTCAGTATTGTTATTAACTCTACccgtg
>TCONS_00001486
AGCCAATCAGCTTTTATAATTGCACTGCCAGCAGGCATGTCGTTAATGCTtcagtttgttttaaaataaagatgaaatgcagatTATATGATCGCAAAACAAGTTTGACATGGATAAATTATTGACGGAGAGAAAAATGGGGTTTATTTCGACACAGTGGCGGTTGCTGTTGGTGAGGACTATACATATCACCGTGGACCATGGCTTCAGCTAACAACTAATTCTAAAAGAAAAGTCAACTACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000103469

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003292 False 708 lncRNA 0.43 3 1291175 1314969
TCONS_00003291 False 810 lncRNA 0.43 4 1291175 1314969
TCONS_00003293 False 829 lncRNA 0.42 3 1291175 1315753
TCONS_00001486 True 244 processed_transcript 0.38 2 1313605 1315753

Neighbor

gene id symbol gene type direction distance location
XLOC_000931 NA coding downstream 37981 1143962 ~ 1253194 (-)
XLOC_000930 CU611053.1 coding downstream 240118 1050941 ~ 1051057 (-)
XLOC_000929 NA coding downstream 276309 1005937 ~ 1014866 (-)
XLOC_000928 gart coding downstream 291619 960209 ~ 999556 (-)
XLOC_000927 NA coding downstream 511561 778575 ~ 779614 (-)
XLOC_000933 CZQB01066256.1 coding upstream 34358 1350111 ~ 1352997 (-)
XLOC_000934 runx1 coding upstream 47179 1362932 ~ 1402303 (-)
XLOC_000935 NA coding upstream 176188 1491941 ~ 1499393 (-)
XLOC_000936 NA coding upstream 239543 1555296 ~ 1583206 (-)
XLOC_000937 clic6 coding upstream 303241 1618994 ~ 1631399 (-)
XLOC_000907 FP067451.1 non-coding downstream 1143329 108285 ~ 147846 (-)
XLOC_000938 NA non-coding upstream 415764 1731517 ~ 1736564 (-)
XLOC_000940 NA non-coding upstream 684913 2000666 ~ 2005535 (-)

Expression


Co-expression Network