XLOC_000936


Basic Information

Item Value
gene id XLOC_000936
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1555296 ~ 1583206 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003294
ATTTATCACAGCATCCGCAAACAGCTAGAAAATTTACTGTTAACAGCTCGACGATCGACACAGTTGTCCCGGCTCCTGAATTTCTCCGAGTTGGCACAGAGGATGGGGTCCGGCATTGACAGATGGGTCGGTCAGGGCAGAAGTGATGCATTTTGGGTGAGGAAAGGCACTGCTCTGGCATCTAGTGTGCTGACTAGCTAGTTAATTGAGAGCCTCTGGAGACCCCTTGCTAGTTTGAGAAGTAGCAAGTGGAACGGGACCAGCGGGGGAGATGGGAAGACCCCAGGGAGAAATGATGAAGAGCAGAGGCCGAGCAGCCATGACAGCGCTGCAACAAACCTTTTAGGCTgtctgctggagctcagactctATTGGATTTGGCTCATGTGCCTGTCTAACGCTGTGAGAGCTGCGCTAATGCGCTGTCAGCCGTTCTGCCTGATGCGCTCTCCTGTCTGGACAACTGTTGCAGGCGAGCAGGTATCTTTCTTAGCTTCTGCTCTTCTTTCGGGCTCCGGCTGAAGTAACTGAGCACCTGCTGGTTTCATCCTTCTCTTCTGTGGCAGCCTCTGGACTCCAAACTCTGAACACTGCTTATCTTTACAGCTGTTAATACAGGCCAAGAAACCCAGCGATCGGACCAGCCCGTGTTAACCATTAACACTTAAACTTGCACCCTTTTTCATCCTGGTGGTTTTGGATGAAGCGAACAGCGGAGAATGAGAgctatgctaatgcaaagagaccTTCAGCGTCTGTCCCCGTCGTTTAAATTACAAGAGCGAGATTAATTTTCCATTCGCAGACCTCTGAAAGATGGCAAACATCTTCCCACAAACATTTGGCTGATAAATGAAAAGCAGCGGCACTCTGGAAATAATGACAGCACACTCTTACTGCGGTAATCACCGAGTCTCTATTGGATATAAAGGCTGATCAATATGCCCTCTGAAGGCCTGCAGAAGGACGAGTGAGGAAAGACAGTCAGGTGACTGAGGATAAAACCAGAATCGGGTGGACTGACATAAGGAATGGATGAAAAGTGTGAGAAGCTCAACCACAATCCACAAGCCAATCAATGTGGAGAAGAAACAGAGCAGCCTTCTCCTGTCCAATGACAAGATGGTCGGCAGAGGTCAGTGCCAAGCCAAGAGGGAATCAGAGTGATGCAAAAT
>TCONS_00002900
tctgcatttaataatgtttagaacattcatcagccaatcagaatcaagcatgcCCCTATAGTTTCACAGCACCAACATATTTACATATGCTTTACGGAGCTGAACTGTGAATAATTATTTCCCACTACCATCACCCTTGAGGGAGAGAAGTGTTCAATGTTTGCAGTCTGTTTAATATCCTACTTCTGTTGCTTTCCGCAGCACTGCTCTGGCATCTAGTGTGCTGACTAGCTAGTTAATTGAGAGCCTCTGGAGACCCCTTGCTAGTTTGAGAAGTAGCAAGTGGAACGGGACCAGCGGGGGAGATGGGAAGACCCCAGGGAGAAATGATGAAGAGCAGAGGCCGAGCAGCCATGACAGCGCTGCAACAAACCTTTTAGGCTgtctgctggagctcagactctATTGGATTTGGCTCATGTGCCTGTCTAACGCTGTGAGAGCTGCGCTAATGCGCTGTCAGCCGTTCTGCCTGATGCGCTCTCCTGTCTGGACAACTGTTGCAGGCGAGGTGAGAGCTGATCTGATCTGATCTAACATCACAAACAGTGAACGTGTTGACGGGAAGTGTGTTTTCGTCACGTCATtgcaaaataaatgctttagaATCCACTTATTCACAGCATGGTCAGGTGCTAAGATTTGCACGTTTTTAATATTGAATATTCGgataaataaagtatatatttatcaatttctcagtgaatataggtaatatattttggcacatttgaacaaaacagatttatttaatgaataaatttagaaaaaatattattttagtctccaaaaattttagaaatataaagaaaatacatttaaattcatgcaaaatattggaaaaactATTGCAAactaaaaaatta
>TCONS_00003295
ATTTATCACAGCATCCGCAAACAGCTAGAAAATTTACTGTTAACAGCTCGACGATCGACACAGTTGTCCCGGCTCCTGAATTTCTCCGAGTTGGCACAGAGGATGGGGTCCGGCATTGACAGATGGGTCGGTCAGGGCAGAAGTGATGCATTTTGGGTGAGGAAAGGGGATAGTTttcagcttgaagggcatctgtgctggataagttggcggttcattccgctgtggccactccggattaataaagggactaagccgaaaatgaatgaatgaatgaattttat

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003294 False 1175 lncRNA 0.49 7 1555296 1583206
TCONS_00002900 False 866 lncRNA 0.40 2 1572981 1578251
TCONS_00003295 True 284 lncRNA 0.47 3 1579918 1583206

Neighbor

gene id symbol gene type direction distance location
XLOC_000935 NA coding downstream 55903 1491941 ~ 1499393 (-)
XLOC_000934 runx1 coding downstream 152993 1362932 ~ 1402303 (-)
XLOC_000933 CZQB01066256.1 coding downstream 202299 1350111 ~ 1352997 (-)
XLOC_000932 NA coding downstream 239543 1291175 ~ 1315753 (-)
XLOC_000931 NA coding downstream 302102 1143962 ~ 1253194 (-)
XLOC_000937 clic6 coding upstream 35788 1618994 ~ 1631399 (-)
XLOC_000938 NA coding upstream 148311 1731517 ~ 1736564 (-)
XLOC_000939 si:ch211-132g1.3 coding upstream 287655 1870861 ~ 1928225 (-)
XLOC_000940 NA coding upstream 417460 2000666 ~ 2005535 (-)
XLOC_000941 oxgr1a.1 coding upstream 464841 2048047 ~ 2051599 (-)
XLOC_000930 CU611053.1 non-coding downstream 504239 1050941 ~ 1051057 (-)
XLOC_000944 NA non-coding upstream 510790 2093996 ~ 2101261 (-)
XLOC_000945 NA non-coding upstream 656005 2239211 ~ 2251036 (-)
XLOC_000949 NA non-coding upstream 911815 2495021 ~ 2502744 (-)

Expression


Co-expression Network