XLOC_000937 (clic6)


Basic Information

Item Value
gene id XLOC_000937
gene name clic6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1618994 ~ 1631399 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001490
AGAAAGCCGGCAGATTTGCAGGATCTCGCTCCTGGAACAAACCCGCCTTTCATGACCTTCAACGGAGAGGTTCTGGTGGACGTCAACAAGATCGAGGAGTTTCTGGAGGAGCGACTGGGCCCGCCACAatatcCAAAATTAGCAACCAAGCATCCAGAATCAAACACCGCAGGAATAGATGTGTTTGCCAAGTTTTCTGCCTACATCAAGAACCCTCGAAAAGAAGCAAATGAGGgtCTGGAGAAAGCTCTGCTGAAGTCTCTGAAGCGGCTGGACGAGTATCTGCAGACGCCGCTGCCTGAAGAAATCGACGCCGACAGTCTGGAGGATCCTGGAGCTTCAACACGCAGCTTTCTGGATGGGGACGAGCTCACGCTGGCCGACTGCAACCTGCTGCCCAAACTGCACATCATCAAGATCGTGGCTAGGAAGTACCGAGGCCTGGAGATTCCTGCAGAGATGAGCGGGATTTGGAGATATCTGAATAAAGCCTATCAGAGAGAGGAGTTCATCAACACCTGCCCTGCTGACCGAGAGATCCAGTTCGCTTACCTGGACGTCGCCAAGAAGATCAAATAGTTCACGATATCCAGACAAACAACTGCTGCTAGATCACAGTCTGGAtctgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtttgtgtgggaggGGGGGTGCTTGTATGTATATgtacgtatgtatactgtttgtgtgtataaatgt
>TCONS_00001491
AGTAGCATGGCTTGGTTTGATGTAGCAGCTAAAAAATTGGGATTTCCTAGCATTGAGCTGTTTGTGAAGgcgggCAGTGATGGCGAAAGCCTCGGGAACTGTCCGTTCTCTCAGAGACTCTTCATGATCCTGTGGCTGAAAGGAGTGATTTTCAATGTTACCACTGTAGACCTGAAGAGAAAGCCGGCAGATTTGCAGGATCTCGCTCCTGGAACAAACCCGCCTTTCATGACCTTCAACGGAGAGGTTCTGGTGGACGTCAACAAGATCGAGGAGTTTCTGGAGGAGCGACTGGGCCCGCCACAatatcCAAAATTAGCAACCAAGCATCCAGAATCAAACACCGCAGGAATAGATGTGTTTGCCAAGTTTTCTGCCTACATCAAGAACCCTCGAAAAGAAGCAAATGAGGgtCTGGAGAAAGCTCTGCTGAAGTCTCTGAAGCGGCTGGACGAGTATCTGCAGACGCCGCTGCCTGAAGAAATCGACGCCGACAGTCTGGAGGATCCTGGAGCTTCAACACGCAGCTTTCTGGATGGGGACGAGCTCACGCTGGCCGACTGCAACCTGCTGCCCAAACTGCACATCATCAAGGTGATCGTGGCTAGGAAGTACCGAGGCCTGGAGATTCCTGCAGAGATGAGCGGGATTTGGAGATATCTGAATAAAGCCTATCAGAGAGAGGAGTTCATCAACACCTGCCCTGCTGACCGAGAGATCCAGTTCGCTTACCTGGACGTCGCCAAGAAGATCAAATAG

Function

symbol description
clic6 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport; glutathione metabolic process; and regulation of ion transmembrane transport. Located in cytoplasm and nucleus.

GO: NA

KEGG:

id description
ko04040 Ion channels

Ensembl:

ensembl_id ENSDARG00000099108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001490 False 738 mRNA 0.51 4 1618994 1627487
TCONS_00001491 True 759 mRNA 0.51 6 1619153 1631399

Neighbor

gene id symbol gene type direction distance location
XLOC_000936 NA coding downstream 35788 1555296 ~ 1583206 (-)
XLOC_000935 NA coding downstream 119601 1491941 ~ 1499393 (-)
XLOC_000934 runx1 coding downstream 216691 1362932 ~ 1402303 (-)
XLOC_000933 CZQB01066256.1 coding downstream 265997 1350111 ~ 1352997 (-)
XLOC_000932 NA coding downstream 303241 1291175 ~ 1315753 (-)
XLOC_000938 NA coding upstream 100118 1731517 ~ 1736564 (-)
XLOC_000939 si:ch211-132g1.3 coding upstream 239462 1870861 ~ 1928225 (-)
XLOC_000940 NA coding upstream 369267 2000666 ~ 2005535 (-)
XLOC_000941 oxgr1a.1 coding upstream 416648 2048047 ~ 2051599 (-)
XLOC_000942 oxgr1a.3 coding upstream 429031 2060430 ~ 2061419 (-)
XLOC_000931 NA non-coding downstream 365800 1143962 ~ 1253194 (-)
XLOC_000944 NA non-coding upstream 462597 2093996 ~ 2101261 (-)
XLOC_000945 NA non-coding upstream 607812 2239211 ~ 2251036 (-)
XLOC_000949 NA non-coding upstream 863622 2495021 ~ 2502744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_04736806_04740333 CLIC6 coding CI01000299 null 4736806 ~ 4740975 (+)
bowfin (Amia calva) AMCG00006293 NA coding CM030134.1 CM030134.1 1715483 ~ 1721110 (+)