XLOC_000938


Basic Information

Item Value
gene id XLOC_000938
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1731517 ~ 1736564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003296
CTAAACCCAATCCCAGACACGCTCCATTAAAACTCTGAGCAGAACTTAGTGGAGAATGTGCATTAGCAAATTGACTATGCACTTCAGGGCCTttgccgacacacacacacacttatactctCACAATGAAAAATGCAATGCTTCTGAGACACATGGTAAAAAGTCTGCTTTATTGGTTTCATCATAACAGTCTTCATTCCCATACAATCACATTTAGGTTCTGCATATACAACATAATAATCAACAAGCCTAACTTTAAcgggtttggtttggtttgtgtGGTTCAGACTTGAACTCATTTTCACATGCATGTCTGTCTACTGTTAAGGGTGCACTGAACACTAAAGCTGGTGTCTCTGTTGCTTCGAAGAGTTTATTTGCAGTCTCTCCCAAATACTTATTCCACACTCCCTAACACAAATCAGAGAACAATCTAGGTTTCAAATGCATAGTCATGTGGAAGTCATGCAAAAATCATGCAGCAACACAACATGAACAAACTCAACGGAAACTTCCCTACGCTCCTATATTGTGCAATTCTCACACTCCAGAGAACTGCATTCACACTTCTTTCTTTTGTGCCTCGTCATTGACCGCTGAACTCGTCCTGACCctcaagttaaataaaaaaacgaaataaataCTTCACTAATACCGCCATCGGTTGACTGGGAAAATAGGAATGATTCAGACACAAAGCACAGATTGGAATAGAAAGGGAAATCAGTGATATAGGAAAGCAAATTAACCAGATTACATTTCGTAATAAGAGCTGGTCCATTAATGTGTATTAGTTTGGCAaatacagggttcatacggtcatgaaaaacctggaaaaggaaatgttattttgacatggcattttccaggcctggaaaagttttggaaaaactcaGATATCTGTATTCTTGAATATAGGGTATTTACTTctattctgtccttggccaatcacacACTCTGACAtgattagtgctgtgtaagcattttctaaatcaattttacatagatataaatatacatttaaactaaatagattgctgCATGTTTTACGATATGCTGTGATAAATTTGCACATgccttgtttttcttttaccacgCCTATGTGGACATTGCATGCCACATtaagtcatgaaaatttacttgaaagtcttggaaaagtcgTGCAATCTAAGTAGTAAAAATGCATATGAACCCTGCAAATATTTAAACTACTCAGATTGACAATTAAGCACATTTCCCTTCCTCAGAATCGTAATGTAAAGCAGATatcatttttattcaattaaaattaatttagttaaatcAGCATTAAACGTTTCCAGAAAGGAACCTGGTTTAAAACGCTTTAATCGTCATGAAAATACTGCACCATACAAATCTCATTGGTCCTAAAGTTAAAATAGCAAATCTGTATAGTTTAACTAcgcataaaaaatactatagtaatttaaagtGAGTATTGTAgtatttttgaaccatactatagtgaaATGTAGCATATTACTGCATATTTTACTGCATATTCATGAATCTTAAGTTATGCAGTAGCATAAATGATGCATTGATGAACTGTAATAAACCTTAGTTTTTACTATAGCAATCTCCAGAGTATTATAGCTGTAGAAAACGacagtattttttaatattactatagTGCTTGTATTAgaatagcaactatagaattaatggtaacactttattttgatggtccatttgagtattagtagactgcctgcttaatatCTGACATCCAACTGACActaaacccaacctaacagtctacttataatctttcaagagttgacacttagctgatgattgattataaagcttgtttggcatgttgtcccgagacagagccctgagctcatgggatcctcgagcctggggctccctcctgtttgcaagccgagatgggagtttgagctcaggtagatcttaagaactcccctgctgtagtagctaatgaacagatagtgatcgctcttaagagataactacagacaaggagcatgtctatggtgacggattagtcaattaacttaagttgcatgtttttggacggtgggaggaaaccaggggaaacccacgtgagcacggagagaacgtgtaaactctgcacagaaatgtcagtTGGCttagtaaggactagaaccagggacgttcttgctgtgaggcaacagtgctaaccactgggccaccgtgccaccaatctaggaaaggaggaggaggaggagtggaagggggggattccttaaaaatgaagatggctgttatattgaactcagggtatttatagtggcttaggaatcggcTGATTGGTGAATGATAAACTGAATAATGCaagaccagccgtgatcaatcataagcatgtgatcctctcgaaattagtttataaataaacttcacaatgaGAATcggttggcatgtagatgcaatgtaacttaaattaaacaaacagaccatcaaaataaagtgaccaaactaacacaacagattaattccagTACTTCAACCTTAATacggttcaaaaacactacactATTTACTTCAATTTACTATATGGCTGAAATATTTCCAtctttttaatgtgatttagCCTTTGCTGGTTGATGAGCATGTCTCATGTGAACGGCAGTGTTTAGAGTTTAAAAGCGGTCCTCGACTTTGTACGTTACGCAATCAGTGGAAAAGTTGAATGAAACATGTCAACCAGCTTGCTTCTAAGCTTGCGTCTCAGGAGGGGAAAACAAActtaattttggcatattatttctgaaaacaagagaaTAGTCTAGAAAACACGTGTTAGATATTGAAAAAaacttaaaagcattttttttttgcagtgtgtgctAAATTGTTCAAGCATTTAAGATTGCTTATGTAAAGAGACCTAGAGCAATAGTCAGATTGGCTATTCATCCACTCAATCGGTTCTTTAACATTAAGTCAATACAGACGTCTGAACAATTTAAGAACATTATTGAATGACAATAGTGCATGTATACAATTAAATGTATTACTTTAATATACTAAATGTATGCATTAGCCATTCATAAACCTGCAGGACATTAAATGCATGACTATTTAGACTGTTAAAGGGATGGATCACcaaaagcacaggtgtcaaactcagttccaaaagggtcgcagctctgcacagtttagttccaaccttaataaacacacctgatcaaactaactgagtccttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccagggattgagtttgacacccctgacctaaagaaaaatacatttactctccctcacgTCGTTCCTCTgcttaaatgtttctttattctgctgaacaccaTACGGATATTTTGAATTAAGATGAAAACTTCCAaatgctatgaaagtcaatggttacagatttccatcTTGCTTTAAAATGTCTTGTTCAATAGAAGCAAGAAACTCAGAAATGTTTGAAGCGAGgctgagtaaatgacagaatttatttttgggtgaaccacccCCTTCAGAATAACCACGATGCATACACTGTTTTATTGCGGTGCATAACTGGATCTGTTTTGAGCCAAAGCCAAAAACTTTGATGAAAAAGCTCATTTGGTGGATCTTTAGAGACCCGATCCCCTTCCCTGCCCTCTCTCTGCTGTGTTTGACTCATGAAACTTTGACTGAAAGCGAGTTGGCTGTGTTTTCGTGCCAGATTTGGGTGGTGTGGGTGGAGAGAAGTGGATCTCCGGTCTCCTCCAGGCATGAGACCTGGACTACACTTTCCAAACCCACTTAAAAATGCGCCCACTCTCATTGAGAAAGGACATCGCACTGCAAAATGAttcaattttatattatttgtcaGTAAGGCTGTTGAAATGGACAGGAGGTTGGCAGAGAGGATGCAAGAGTTTCCTTTTCATTCTCAGCTCTGACACTTATGCACAGGCTCCATTCAgaataataaatactaatttaCCATTGTAACCAGTGTTTTTACACCAAATTCAATTTAGGTTAACGTTTATTATGGTTTTTAGCATTAAGTTATAGTCGTTCCATTAATTTTTTTAGTTCAGCAGTAACAATAAATATAGCAACCCTGATATTGTGGTGCAAACTATGGTTACAATAGTCTACTTTTATAAGGGTTACAAAGGTAAAACACCAGACAAACAGGGGCATTGTGGGCATGCACTCAAGCTCCGAGCACTTTCCAGATGAAAACAAACCAACTTATGAGTAAATCAAAAAACTAAACAAGGAAATGACACAAATGTGGGACCTGActgcaagtttatttttatattacacttttaaaaacatg

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0007610 behavior biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0030537 larval behavior biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007626 locomotory behavior biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0070142 synaptic vesicle budding biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0048666 neuron development biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051656 establishment of organelle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003296 True 4359 lncRNA 0.38 2 1731517 1736564

Neighbor

gene id symbol gene type direction distance location
XLOC_000937 clic6 coding downstream 100118 1618994 ~ 1631399 (-)
XLOC_000936 NA coding downstream 148311 1555296 ~ 1583206 (-)
XLOC_000935 NA coding downstream 232124 1491941 ~ 1499393 (-)
XLOC_000934 runx1 coding downstream 329214 1362932 ~ 1402303 (-)
XLOC_000933 CZQB01066256.1 coding downstream 378520 1350111 ~ 1352997 (-)
XLOC_000939 si:ch211-132g1.3 coding upstream 134297 1870861 ~ 1928225 (-)
XLOC_000940 NA coding upstream 264102 2000666 ~ 2005535 (-)
XLOC_000941 oxgr1a.1 coding upstream 311483 2048047 ~ 2051599 (-)
XLOC_000942 oxgr1a.3 coding upstream 323866 2060430 ~ 2061419 (-)
XLOC_000943 oxgr1a.2 coding upstream 337949 2074513 ~ 2075529 (-)
XLOC_000932 NA non-coding downstream 415764 1291175 ~ 1315753 (-)
XLOC_000931 NA non-coding downstream 478323 1143962 ~ 1253194 (-)
XLOC_000944 NA non-coding upstream 357432 2093996 ~ 2101261 (-)
XLOC_000945 NA non-coding upstream 502647 2239211 ~ 2251036 (-)
XLOC_000949 NA non-coding upstream 758457 2495021 ~ 2502744 (-)
XLOC_000950 CU986306.1 non-coding upstream 968040 2704604 ~ 2714275 (-)

Expression


Co-expression Network