XLOC_000939 (si:ch211-132g1.3)


Basic Information

Item Value
gene id XLOC_000939
gene name si:ch211-132g1.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1870861 ~ 1928225 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001492
aaaagatCAAGGTAAAAAAGATGGTGAATCAGCGGGAAATGACCCTGCGAGCTCAACTCCCCTGAAAAACCAAACTCAAgCAAACTCAACTCTCCAGGGAAACCAAACtcaaggtgaaaacaacGCTGGCGGAGCTGAAGATGGATATGGTA
>TCONS_00001493
GACATTCGTCGTAGGGTGTGTTTCCCCTGCGCGGCTATTTTTGGCTAATAGTATAGAGAAATAGCTTCATAAAGTACAAATTGTATGAAAATGTTCCTTCTAAGATACTCGGCTGCCGCCCTATGCTTCGTGTTCGCCTTAGGAGCAGTTTCAGGCAAAGAGGTGAAAGCAGTGGGTGATGAAGTTTCTTTTACTCCAGCCAGTCCTATCACTAAAGGAGCCAGCATTATATGGAAACACATAAGCACTAGTGGAGCTGTTACCAAGGCGATTGAATATGATGAAGATGGTGTAAATATCTGGAATAATAACTTCCTCGGCATCACAAGTCTTGATGAGAAGACTGGAAAAATCACTATAAAAAACTTAACTTTTTTCCACACTGGAGTTTACACCATTGACATCAACAGCAAAGAGCAGACACAAAGATTCAGCCTGACTGTTAAAGAGGAATCAAGCAGCGGACCTTGGTGGATCATTTTTCCTTTCCTCATCCTTGGTGGTATTGGGGCCTGCTTTGGTCTATATTGCAAAAACGGGAGTGTCAAGAAGTTTGTTGATGAACATGTTCCATGTAAAAAAGatCAAGGTAAAAAAGATGGTGAATCAGCGGGAAATGACCCTGCGAGCTCAACTCCCCTGAAAAACCAAACTCAAgCAAACTCAACTCTCCAGGGAAACCAAACtcaaggt
>TCONS_00001494
CGTCGTAGGGTGTGTTTCCCCTGCGCGGCTATTTTTGGCTAATAGTATAGAGAAATAGCTTCATAAAGTACAAATTGTATGAAAATGTTCCTTCTAAGATACTCGGCTGCCGCCCTATGCTTCGTGTTCGCCTTAGGAGCAGTTTCAGGCAAAGAGGTGAAAGCAGTGGGTGATGAAGTTTCTTTTACTCCAGCCAGTCCTATCACTAAAGGAGCCAGCATTATATGGAAACACATAAGCACTAGTGGAGCTGTTACCAAGGCGATTGAATATGATGAAGATGGTGTAAATATCTGGAATAATAACTTCCTCGGCATCACAAGTCTTGATGAGAAGACTGGAAAAATCACTATAAAAAACTTAACTTTTTTCCACACTGGAGTTTACACCATTGACATCAACAGCAAAGAGCAGACACAAAGATTCAGCCTGACTGTTAAAGAGCGGGTGCCCAAACCTACGATAACAATAGAGAAATCTGCCGACTCAAAAGCTGCATATTTGACATGCAAGTATGATGAAAGCGTCACCATGGAGTTATCAATCATTTGGAAGAATTCTACTGGAGAAATTAAGACCTTGACGAGTAATGAGCGAAGTCAGTCCATCACAGTCCACAGCACTGGAAATCCAAAGAACTACTACACATGCACACTAGATAACATCGCAAGTCGTGCAACCAGTGATCCAGTCACTGAGGAACAGCTGTTTGAAGAGGAATCAAGCAGCGGACCTTGGTGGATCATTTTTCCTTTCCTCATCCTTGGTGGTATTGGGGCCTGCTTTGGTCTATATTGCAAAAACGGGAGTGTCAAGAAGTTTGTTGATGAACATGTTCCATGTAAAAAAGatCAAGGTAAAAAAGATGGTGAATCAGCGGGAAATGACCCTGtctaagcagggtgaatctgccttcagccactatgcccctcgctgctggaatcagcttccagaaatgatcagatgtgctccaacattaggcacattcaaatcaagactgaaaacacatctgtttagctgtgcctttactgaatgagcactgtgctgcgtccgacagatcgcactattatgtttttcgttttctttttcattcttttataacctattttaactcattttaatttgtttttatctgtttttaatattttttattgtctgcattttattttcctaaacttgtcttttttattcctgtttatgtaaagcactttgaattgccactgtgtatgaaatgtgctatat
>TCONS_00001495
ATGAAAATGTTCCTTCTAAGATACTCGGCTGCCGCCCTATGCTTCGTGTTCGCCTTAGGAGCAGTTTCAGGCAAAGAGGTGAAAGCAGTGGGTGATGAAGTTTCTTTTACTCCAGCCAGTCCTATCACTAAAGGAGCCAGCATTATATGGAAACACATAAGCACTAGTGGAGCTGTTACCAAGGCGATTGAATATGATGAAGATGGTGTAAATATCTGGAATAATAACTTCCTCGGCATCACAAGTCTTGATGAGAAGACTGGAAAAATCACTATAAAAAACTTAACTTTTTTCCACACTGGAGTTTACACCATTGACATCAACAGCAAAGAGCAGACACAAAGATTCAGCCTGACTGTTAAAGAGCGGGTGCCCAAACCTACGATAACAATAGAGAAATCTGCCGACTCAAAAGCTGCATATTTGACATGCAAGTATGATGAAAGCGTCACCATGGAGTTATCAATCATTTGGAAGAATTCTACTGGAGAAATTAAGACCTTGACGAGTAATGAGCGAAGTCAGTCCATCACAGTCCACAGCACTGGAAATCCAAAGAACTACTACACATGCACACTAGATAACATCGCAAGTCGTGCAACCAGTGATCCAGTCACTGAGGAACAGCTGTTTGAAGAGGAATCAAGCAGCGGACCTTGGTGGATCATTTTTCCTTTCCTCATCCTTGGTGGTATTGGGGCCTGCTTTGGTCTATATTGCAAAAACGGGAGTGTCAAGAAGTTTGTTGATGAACATGTTCCATGTAAAAAAGatCAAGGTAAAAAAGATGGTGAATCAGCGGGAAATGACCCTGGT
>TCONS_00001496
agcatagctacAGGTTGTTGCGTTTGGCCCTCTAGTGGTTGAAATCTACAAGTAACTCGCGGAGGAACATTGTTTTGTCGCCATGACATGAGCTGTGGTTCGGCCCCGCTGTTTGCCGCGGATGAATCTGATGCGGTCGTGATCTCCTCAgtgtttaaatgtcactaaaacaACTTTTAAAGTATCCCAATATCAAAAGATGGATATACGAAAAATACATCCAATAAACAGctcTAGGTTCATCGATGAGCCActtcagccaatagcagaacGGCACTACTGTGGAGGCAAAGAGGTGAAAGCAGTGGGTGATGAAGTTTCTTTTACTCCAGCCAGTCCTATCACTAAAGGAGCCAGCATTATATGGAAACACATAAGCACTAGTGGAGCTGTTACCAAGGCGATTGAATATGATGAAGATGGTGTAAATATCTGGAATAATAACTTCCTCGGCATCACAAGTCTTGATGAGAAGACTGGAAAAATCACTATAAAAAACTTAACTTTTTTCCACACTGGAGTTTACACCATTGACATCAACAGCAAAGAGCAGACACAAAGATTCAGCCTGACTGTTAAAGAGCGGGTGCCCAAACCTACGATAACAATAGAGAAATCTGCCGACTCAAAAGCTGCATATTTGACATGCAAGTATGATGAAAGCGTCACCATGGAGTTATCAATCATTTGGAAGAATTCTACTGGAGAAATTAAGACCTTGACGAGTAATGAGCGAAGTCAGTCCATCACAGTCCACAGCACTGGAAATCCAAAGAACTACTACACATGCACACTAGATAACATCGCAAGTCGTGCAACCAGTGATCCAGTCACTGAGGAACAGCTGTTTGAAGAGGAATCAAGCAGCGGACCTTGGTGGATCATTTTTCCTTTCCTCATCCTTGGTGGTATTGGGGCCTGCTTTGGTCTATATTGCAAAAACGGGAGTGTCAAGAGTAAGTCTATTAAATgtAGTTTGTTGATGAACATGTTCCAT
>TCONS_00001497
GCCGCGGATGAATCTGATGCGGTCGTGATCTCCTCAgtgtttaaatgtcactaaaacaACTTTTAAAGTATCCCAATATCAAAAGATGGATATACGAAAAATACATCCAATAAACAGctcTAGGTTCATCGATGAGCCActtcagccaatagcagaacGGCACTACTGTGGAGGCAAAGAGGTGAAAGCAGTGGGTGATGAAGTTTCTTTTACTCCAGCCAGTCCTATCACTAAAGGAGCCAGCATTATATGGAAACACATAAGCACTAGTGGAGCTGTTACCAAGGCGATTGAATATGATGAAGATGGTGTAAATAT
>TCONS_00001498
agcatagctacAGGTTGTTGCGTTTGGCCCTCTAGTGGTTGAAATCTACAAGTAACTCGCGGAGGAACATTGTTTTGTCGCCATGACATGAGCTGTGGTTCGGCCCCGCTGTTTGCCGCGGATGAATCTGATGCGGTCGTGATCTCCTCAgtgtttaaatgtcactaaaacaACTTTTAAAGTATCCCAATATCAAAAGATGGATATACGAAAAATACATCCAATAAACAGctcTAGGTTCATCGATGAGCCActtcagccaatagcagaacGGCACTACTGTGGAGGTGATGATGTGACGAATGCTGTGACAACTGATGTTACTTTCACTCCGATTGTTCCGCCTCCTAGCACCAGCAGCATTATATGGAAGCACAGAAACAATGCTGGAGTTGTTGTGAAAGTCATTGAATGGGACCAGGATGATGGCAGAACTGAAATTCCCAACCACAACTTCAGAGCCCACGCTAGtctgaacaaacacactggaGAGCTCACTCTGACAAATTTACAGCTCAAACACACTGGCGTTTACACTATTGACATCAACAGTAAAGAGCAGAGAAAGCACTTCCGCCTGACTGTTATGGATCGTGTCAGCAAACCTGATATAAAAACAAACTGTGATCTGGAAAACATTCCTGTCTGTTCTCTGAATTGTGAGGGCGAAGCTTCCTCTAAGAGTACAGTAATCTGGCAGAACTCAGCCGGACAGACGCTAAACAGCAGAGATCCTAATATGAGGACCATCAAAGTGACCAACAGCAGTAACCCTGAGGAGTTTTACACCTGTACACTGAAAAACGCAGTCAGCATGGAGACCAGTGATCCAGTCTATGAGAAGAAGCTGTTTTATGgTACAAACGGACCATTAATTGCCATTCTTTCGACTGTTATAGTTGTCATCTGTCTGATTTGTGGTGTCTGTGCTGCTTTCTGTAGGAGGAgggcatgaatgaatgaa
>TCONS_00001499
TTTTGGATTAAATGAACctaatatttaagtaaaaatgACCAATTATTGGGTAGAAAACCAATATAGGGtaaaaataataacccaattAGGTTATTTTAACCCCTGATGTGTTCTGTACCATATTTACCCAGCAGTAGGGTTAAAAACAAACCAATTTGGGTagtttttaaccctgtgtttttAGGCAGCTGATAATAACAGGTGGATTTTAGTAAaattcgtcacttgtcaatcattctccagtcctccattggccagACATACGTCCTCTTTTTCTATAAATTCTTTGCACAACATTAAAAAGCACAAGACTTGCAAATGCTGTGCCCACAGTTTCTTCTTAAGTTAATTTTGGACAAGTGTTTATCTACTTCTGCATAAAAGCTtcattagtatgcacagcatATCACACTCATACAgaatttcagtaatttataacCTTTAATTAAAGCAGTACAAATAAttctttaatgaaaagaaaaagagacaaaaataataaacaatatattccTTTTTCCCAACgtttattttgagttttttttctctcgttTTTCTTTTGTGTCACATTAACACAGCTTTACTACCACAAGAGGCAGTAAACAACACAGTCAGTGATCTCCTGATCCTACAGACTCAGGCAAACAAAAAGCGCTCTGTTATACGCGCTCAAAAGACTCACAGATGCAGGAATACATTACATATTTACAGAAAACACAGGAGATCGATCCAGAGGAGGACAAACAGTGTGAAGATGTTCTTCAGGGGGACCAATATTCTCTGGATGTTGATATTCTGGCGATCTGCTTCAGGTGATGATGTGACGAATGCTGTGACAACTGATGTTACTTTCACTCCGATTGTTCCGCCTCCTAGCACCAGCAGCATTATATGGAAGCACAGAAACAATGCTGGAGTTGTTGTGAAAGTCATTGAATGGGACCAGGATGATGGCAGAACTGAAATTCCCAACCACAACTTCAGAGCCCACGCTAGtctgaacaaacacactggaGAGCTCACTCTGACAAATTTACAGCTCAAACACACTGGCGTTTACACTATTGACATCAACAGTAAAGAGCAGAGAAAGCACTTCCGCCTGACTGTTATGGATCGTGTCAGCAAACCTGATATAAAAACAAACTGTGATCTGGAAAACATTCCTGTCTGTTCTCTGAATTGTGAGGGCGAAGCTTCCTCTAAGAGTACAGTAATCTGGCAGAACTCAGCCGGACAGACGCTAAACAGCAGAGATCCTAATATGAGGACCATCAAAGTGACCAACAGCAGTAACCCTGAGGAGTTTTACACCTGTACACTGAAAAACGCAGTCAGCATGGAGACCAGTGATCCAGTCTATGAGAAGAAGCTGTTTTATGgTACAAACGGACCATTAATTGCCATTCTTTCGACTGTTATAGTTGTCATCTGTCTGATTTGTGGTAAGAttatattgtgtttaatttttgtttcattttgttaaacatttggACCTTTGACTCATACAGAAATTA
>TCONS_00001500
GAGATCGATCCAGAGGAGGACAAACAGTGTGAAGATGTTCTTCAGGGGGACCAATATTCTCTGGATGTTGATATTCTGGCGATCTGCTTCAGGTGATGATGTGACGAATGCTGTGACAACTGATGTTACTTTCACTCCGATTGTTCCGCCTCCTAGCACCAGCAGCATTATATGGAAGCACAGAAACAATGCTGGAGTTGTTGTGAAAGTCATTGAATGGGACCAGGATGATGGCAGAACTGAAATTCCCAACCACAACTTCAGAGCCCACGCTAGtctgaacaaacacactggaGAGCTCACTCTGACAAATTTACAGCTCAAACACACTGGCGTTTACACTATTGACATCAACAGTAAAGAGCAGAGAAAGCACTTCCGCCTGACTGTTATGGATCGTGTCAGCAAACCTGATATAAAAACAAACTGTGATCTGGAAAACATTCCTGTCTGTTCTCTGAATTGTGAGGGCGAAGCTTCCTCTAAGAGTACAGTAATCTGGCAGAACTCAGCCGGACAGACGCTAAACAGCAGAGATCCTAATATGAGGACCATCAAAGTGACCAACAGCAGTAACCCTGAGGAGTTTTACACCTGTACACTGAAAAACGCAGTCAGCATGGAGACCAGTGATCCAGTCTATGAGAAGAAGCTGTTTTATGGTA
>TCONS_00001501
ACCCTTTGTTCTTCTTCATTTTAGACCGCATTAACGTGATGATGTGACGAATGCTGTGACAACTGATGTTACTTTCACTCCGATTGTTCCGCCTCCTAGCACCAGCAGCATTATATGGAAGCACAGAAACAATGCTGGAGTTGTTGTGAAAGTCATTGAATGGGACCAGGATGATGGCAGAACTGAAATTCCCAACCACAACTTCAGAGCCCACGCTAGtctgaacaaacacactggaGAGCTCACTCTGACAAATTTACAGCTCAAACACACTGGCGTTTACACTATTGACATCAACAGTAAAGAGCAGAGAAAGCACTTCCGCCTGACTGTTATGGATCGTGTCAGCAAACCTGATATAAAAACAAACTGTGATCTGGAAAACATTCCTGTCTGTTCTCTGAATTGTGAGGGCGAAGCTTCCTCTAAGAGTACAGTAATCTGGCAGAACTCAGCCGGACAGACGCTAAACAGCAGAGATCCTAATATGAGGACCATCAAAGTGACCAACAGCAGTAACCCTGAGGAGTTTTACACCTGTACACTGAAAAACGCAGTCAGCATGGAGACCAGTGATCCAGTCTATGAGAAGAAGCTGTTTTATGGTA

Function

symbol description
si:ch211-132g1.3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-148 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000089477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001492 False 152 processed_transcript 0.45 4 1870861 1875118
TCONS_00001493 False 693 processed_transcript 0.42 7 1874008 1885600
TCONS_00001494 False 1242 mRNA 0.40 7 1874427 1885594
TCONS_00001495 False 816 mRNA 0.42 6 1875070 1885516
TCONS_00001496 False 997 lncRNA 0.43 6 1877191 1928225
TCONS_00001497 False 318 processed_transcript 0.42 3 1884360 1928111
TCONS_00001498 False 964 lncRNA 0.45 6 1887620 1928225
TCONS_00001499 False 1514 mRNA 0.38 4 1888541 1894722
TCONS_00001500 False 665 processed_transcript 0.45 3 1890171 1894005
TCONS_00001501 True 608 lncRNA 0.44 3 1890171 1898407

Neighbor

gene id symbol gene type direction distance location
XLOC_000938 NA coding downstream 134297 1731517 ~ 1736564 (-)
XLOC_000937 clic6 coding downstream 239462 1618994 ~ 1631399 (-)
XLOC_000936 NA coding downstream 287655 1555296 ~ 1583206 (-)
XLOC_000935 NA coding downstream 371468 1491941 ~ 1499393 (-)
XLOC_000934 runx1 coding downstream 468558 1362932 ~ 1402303 (-)
XLOC_000940 NA coding upstream 72441 2000666 ~ 2005535 (-)
XLOC_000941 oxgr1a.1 coding upstream 119822 2048047 ~ 2051599 (-)
XLOC_000942 oxgr1a.3 coding upstream 132205 2060430 ~ 2061419 (-)
XLOC_000943 oxgr1a.2 coding upstream 146288 2074513 ~ 2075529 (-)
XLOC_000944 NA coding upstream 165771 2093996 ~ 2101261 (-)
XLOC_000933 CZQB01066256.1 non-coding downstream 517864 1350111 ~ 1352997 (-)
XLOC_000932 NA non-coding downstream 555108 1291175 ~ 1315753 (-)
XLOC_000945 NA non-coding upstream 310986 2239211 ~ 2251036 (-)
XLOC_000949 NA non-coding upstream 566796 2495021 ~ 2502744 (-)
XLOC_000950 CU986306.1 non-coding upstream 776379 2704604 ~ 2714275 (-)

Expression


Co-expression Network