XLOC_009436 (si:dkey-42l23.4)


Basic Information

Item Value
gene id XLOC_009436
gene name si:dkey-42l23.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37766097 ~ 37767901 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018539
ATTTAGTCAATAGGGATGTACCAGGGTTTGCTCTGGTATAAAACCAACTATCGGTCAGCACAAACAAGAAGACGGAACAAGATCAAGACTCGACTCCTTCCACTGCATCTCAAAAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAATACTGTGGAGGATGAGGGATTTAAGATTTTTCTTGCCTGCATTTTATCTGTAACCTTTGTAGTGGGTCTCATTGGAAATGGTCTAGTCATATTTCTGACCggctgcagaatgaaaatgacTGTCAACTCCACTTGGTTTTTGAATTTGGCGATTGCAGACTTCAtcttcattttaatttcaatCACAAATTTTTCCTTAAAGTGGAGCAAGCAGCACAGTGACTTCACAGAGTACTTTTTTATCATCACAACATCTCTAAATCTGTTTATTAGTGTTTGGTCTCTTGTAGTTATCAGTCTGGATCGATGTCTGTGCACATGGATGCCTGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCGTACTTCAAAGTTTTTAACATTACAGATACAATTATTGTCACATATGAATTTATAGTGGTCTTTTTCATCACCTTCCTGATCATTACATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAAAATGGGGAAGCAGCTCAGGTCATACAGACTCATTATAACTGTAATCCTGACCTTCTTCATCTGTTCATTTCCACACCATGTTTGCTGGATTTTGAGAATAAGGGCAAACAATAATAATTGGACTCTCACTAAACAATTTTGGATGCTATTTGATTTTACTTTCTACCTGATTAATCTTAACAGCAGTTTGAATCCATTTCTCTATGTGTTCATGAGTAAGGATTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTAGAGACGGCATTTACTGAAGGTCATTTGGACGTTAAAGAAATGAGACAGACACACCACACTTGAATTGCTAGAAATGTAGAAAACTATCTGGGGGGGTCTGTCTTCATTGAGGTTTGTGTCCTTCATCTAACTTTATTCAATTAAAAGCACTgattttctgtcattgtgtgtctctgTATGAGTGCTGTCGTGATCACGCTTGGGCTGTGCACGCTCCTGTGTAATGAGGGCGCGCGAGGTCTGGATTTGCACTCTTGTCCtggtgtctgtgtttgttttgtctgcagCATGATCAGTAACAATTTCTTTTATGAACAAAAGTACCAcataagtacagtgaaataacagtGTACTTTGCTGTACAAATAATATAAGTATAAagatgtgtaggtataagggaacaaactgtaatgcttcgTTTTACTCTGCGTTGTGTTTAGGTGAACAGAACCAGTCATATGGGAG

Function

symbol description
si:dkey-42l23.4 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-534 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

Ensembl:

ensembl_id ENSDARG00000097782

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018539 True 1443 mRNA 0.39 2 37766097 37767901

Neighbor

gene id symbol gene type direction distance location
XLOC_009435 si:dkey-42l23.5 coding downstream 13861 37751113 ~ 37752236 (-)
XLOC_009434 si:dkey-42l23.6 coding downstream 22484 37741382 ~ 37743613 (-)
XLOC_009433 si:dkey-42l23.7 coding downstream 32222 37731055 ~ 37733875 (-)
XLOC_009432 CR848836.1 coding downstream 36931 37727834 ~ 37729166 (-)
XLOC_009431 si:dkey-117a8.1 coding downstream 46418 37707269 ~ 37719679 (-)
XLOC_009437 si:dkey-42l23.9 coding upstream 5225 37773126 ~ 37774544 (-)
XLOC_009438 si:dkey-42l23.3 coding upstream 10673 37778574 ~ 37779978 (-)
XLOC_009439 si:dkey-42l23.2 coding upstream 27385 37795286 ~ 37799496 (-)
XLOC_009440 si:dkey-42l23.1 coding upstream 38210 37806111 ~ 37807023 (-)
XLOC_009441 ctrl coding upstream 52357 37820258 ~ 37829160 (-)
XLOC_009422 CR848749.2 non-coding downstream 501832 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 891731 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 981324 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1262908 36500206 ~ 36503189 (-)
XLOC_009444 CR944667.3 non-coding upstream 108815 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 528256 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 657647 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 779926 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 1134032 38901933 ~ 38910271 (-)

Expression


Co-expression Network