XLOC_000944


Basic Information

Item Value
gene id XLOC_000944
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2093996 ~ 2101261 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003302
CACAAACATAAACACCATCACCGCCATCTCCTGCGGGACCAGCTTCTCGTACACAAAAATCACGCTGGAAAACATTGAGATTTCACCTTCTATAACCTCATGCACATTTGCATCCCTGAAAACAAACATGTGCGAGTGAGGGAATGAGAATGCGACTCGGATGGCCATTTGGGGAGTTGTTTTGATGTGAGTTGAAGCTTCACTGGTGCTGAGATGTAAAGACGCTTCGCTGGTTAAGCTCTTCTGTCGAAAGGTCACCCGTCCGTGGCTTTGAGCTTTAAACGGATGCCACCAGCCCTCAAACCCAACACATCGATTCATAAAAAT
>TCONS_00003303
GGAAACACGAGTGAATCTCCCGAGGGCCCCGTGGATTTGGGCTCCAGCGCTGCGAAATCAACAAGCTGAAGGCCTGATTTTACATCTCTAATAAGATTTCACCTTCTATAACCTCATGCACATTTGCATCCCTGAAAACAAACATGTGCGAGTGAGGGAATGAGAATGCGACTCGGATGGCCATTTGGGGAGTTGTTTTGATGTGAGTTGAAGCTTCACTGGTGCTGAGATGTAAAGACGCTTCGCTGGTTAAGCTCTTCTGTCGAAAGGTCACCCGTCCGTGGCTTTGAGCTTTAAACGGATGCCACCAGCCCTCAAACCCAACACATCGATTCATAAAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003302 False 327 lncRNA 0.47 2 2093996 2096349
TCONS_00003303 True 343 lncRNA 0.48 2 2093996 2101261

Neighbor

gene id symbol gene type direction distance location
XLOC_000943 oxgr1a.2 coding downstream 18467 2074513 ~ 2075529 (-)
XLOC_000942 oxgr1a.3 coding downstream 32577 2060430 ~ 2061419 (-)
XLOC_000941 oxgr1a.1 coding downstream 42397 2048047 ~ 2051599 (-)
XLOC_000940 NA coding downstream 88461 2000666 ~ 2005535 (-)
XLOC_000939 si:ch211-132g1.3 coding downstream 165771 1870861 ~ 1928225 (-)
XLOC_000945 NA coding upstream 137950 2239211 ~ 2251036 (-)
XLOC_000946 si:ch211-235f1.3 coding upstream 230376 2331637 ~ 2334254 (-)
XLOC_000947 ggact.3 coding upstream 345735 2446996 ~ 2453185 (-)
XLOC_000948 ggact.1 coding upstream 352833 2454094 ~ 2457546 (-)
XLOC_000949 NA coding upstream 393760 2495021 ~ 2502744 (-)
XLOC_000938 NA non-coding downstream 357432 1731517 ~ 1736564 (-)
XLOC_000936 NA non-coding downstream 510790 1555296 ~ 1583206 (-)
XLOC_000935 NA non-coding downstream 594603 1491941 ~ 1499393 (-)
XLOC_000933 CZQB01066256.1 non-coding downstream 740999 1350111 ~ 1352997 (-)
XLOC_000950 CU986306.1 non-coding upstream 603343 2704604 ~ 2714275 (-)
XLOC_000952 NA non-coding upstream 1195346 3296607 ~ 3299853 (-)
XLOC_000953 CABZ01113467.1 non-coding upstream 1204288 3305549 ~ 3330435 (-)

Expression


Co-expression Network