XLOC_000945



Basic Information


Item Value
gene id XLOC_000945
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2239211 ~ 2251036 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00003304
GCGAGGCTCATTTCTGTGTGGGAGAATAAACTGACACGCTGAAAGGGTTTGATAAAGAGCAAAGCTTCTGAGCACACCGTATATCTGCACCTCCGTCTTCACACAGAGCGCTGATTTACCGTAAAGCGACGCGTCACCGCTGCAGTTGCCATGACAGCGCGCGCCGTGGCTTCAGGCGAATCTTGTCCTCCATAGAGCCGCGGTTTTTTCCTCTTCTGGTGTTGTTGATCACTGCAGGATCTCCGAGGAGGATGAAAGCTGATGCAGTGGGTGGTGTGAAATCTGCTGTCAAACCGCACTCATTCCAGCAGATATACTGTATGAACAGCATAGAAAACACCGCTAACACTGCAGCTCCGGACAAACGGCTGTGAGAGGTCTGcaggtgtgaatgtgtgtgggagGAAAGCAGAACAGATGAAATGTCACCCGCCGCCGCTGCATGGAGAAAAACACTATTTATAGTCTGAGAGACAGCAGGGACGCCTGGAGTCTGAGAGCTTGTGTCACATCCATGAACATATGCTGGATCTATGATCACAGTCACACTTTCAGCtgcaaacatgtgtgtgtgtgtgtgtgagtggaacAGATAGGGTAGAGTTCATTGTTATTGTGAATGCTGACATGATGTACATTGGGTTTGTACACCTTTTATGAAGCGCTGATGAAGAACAGCAATAAAGCCGC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00003304 True 690 lncRNA 0.49 2 2239211 2251036

Neighbor


gene id symbol gene type direction distance location
XLOC_000944 NA coding downstream 137950 2093996 ~ 2101261 (-)
XLOC_000943 oxgr1a.2 coding downstream 163682 2074513 ~ 2075529 (-)
XLOC_000942 oxgr1a.3 coding downstream 177792 2060430 ~ 2061419 (-)
XLOC_000941 oxgr1a.1 coding downstream 187612 2048047 ~ 2051599 (-)
XLOC_000940 NA coding downstream 233676 2000666 ~ 2005535 (-)
XLOC_000946 si:ch211-235f1.3 coding upstream 80601 2331637 ~ 2334254 (-)
XLOC_000947 ggact.3 coding upstream 195960 2446996 ~ 2453185 (-)
XLOC_000948 ggact.1 coding upstream 203058 2454094 ~ 2457546 (-)
XLOC_000949 NA coding upstream 243985 2495021 ~ 2502744 (-)
XLOC_000950 CU986306.1 coding upstream 453568 2704604 ~ 2714275 (-)
XLOC_000938 NA non-coding downstream 502647 1731517 ~ 1736564 (-)
XLOC_000936 NA non-coding downstream 656005 1555296 ~ 1583206 (-)
XLOC_000935 NA non-coding downstream 739818 1491941 ~ 1499393 (-)
XLOC_000952 NA non-coding upstream 1045571 3296607 ~ 3299853 (-)
XLOC_000953 CABZ01113467.1 non-coding upstream 1054513 3305549 ~ 3330435 (-)
XLOC_000954 NA non-coding upstream 1593800 3844836 ~ 3846864 (-)

Expression



Co-expression Network