XLOC_000947 (ggact.3)


Basic Information

Item Value
gene id XLOC_000947
gene name ggact.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2446996 ~ 2453185 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001506
AAAATGAAAGGCGGAAGTGCTGCTGAATGAAGTTGTTGATCAAACATTCCGTGAGACCTTCACGAAAGAaaggatttttttcaatattatcgGTCTTAGTCATGAACAGTACAATGAATACTACAGTCAGCATGAGCACCCATCATGTATTTGTGTACGGCTCACTAAAGAAAGGCCAGCCAAACCACCACGAACTCTTGAACTCTAACAATGGTCAAGCTGAGTTCATCACCTGCGCCCAGACCAAAGAGCCATACCCGCTGGTTATTGCCACCAAACACAACATTCCTTTTCTGCTGAATGTGCCCGGCTCTGGAAAGCAGGTCTCTGGTGAGATCTACAGCGTTGACCAGAAGATGCTGGAGTTCCTGGACTGGTTTGAGAAATGTCCAGACTGGTACCAGCGCACTTCCATCCAGCTGGAGATCCTAAAGGGGAATGGAGAATCTGGAAGAATTGAGGAGGCTTCTGTCTACAGCAAAATAAATTTTGAACCCGACTGGCTCAACAAGCCCACACATGAAAGTTATGATACCAATGGTGACCATGGACTGAAATTTGTGTGTCGAGAAGACAGGAAAGATGATTAACTTGTATATCTGGGTCTGTACCATGAAGCCAGATTAGCTCTCAACAGttaagtttaagtttagtttagtttgcacCTATCCTGGGTTTTAGGTACCATGAAGGCAGCTTGACTTTAATCACTTTGTTACTTGTGGTAACGACTAACCTGCTCCAGGTAAGTTTATATTCCAGGGTTGCATTCCGGATGTCTATACTAATCCCGATAAAtttgaaaatgtcattttcatCTAAAAACACTCCATGTCCACACTCgtttccgatttttttttttgtcatccatacaaaaatgattgaaatgcttttattcatgtactgttttaCCTCCATCACATCCGCCTGGTGTTTATTTACTTTGTCTTTTTGAAATGTTGCAGCAAAAACATGTCACAACTGTGGTCTGCTTCCTCTGCTGAACAGCAGCTTACACTAAACATTCCCTGTCCTTTGAAGAGAGGCAATATGGAGCATGTACAAACGGACAATAATCTTTAATACTGCGTCACATGACTAAAATCCATAATTGTTTTCGAAAGCCTCTGTCTTCAAAGCCCACACTGCAACATGAAAATGACTATTTCAAATTTGTCCACTTTGGGCCATGTCCActctaatatttttgttttaaattgcatCTTTTTCTCTGTTTTGATCTTTCATCCACAATGAGACAGTGTTTTAaggaaatgaaaacatttttttgaaaacactgtccaAAGTAGTGGTGGGCAGAGTGAGGGtttgtgaaacactgaaacagtcgaagcaaatgtgttgaAGCTTCTTAATGTTTTGAAACCTCTCTCTATAGTGACACCTAGTGATCATTTTCTGTATTTCTCGGATAGCTTTAGCAAAGAAACAGTGATGTAAATTAAGATATTAAACGTTGTCAGGTTTAgttttcaagtgatttagtggagcGGTGAAAGTTCCTGATTTGCATAACTTGGGTGTTTTGGATTATGCTTTGGTGCAGTGTTTGGGCTTCGTgatcttaacattgtcaacatCAGTTTCGCATCAGCCATCCTTAGACCAAAGTGGACAAATTTAAATATGATTATGGTGATAATTATGGTGTCAATCTTTTAATCTTT
>TCONS_00001507
GGTCTTAGTCATGAACAGTACAATGAATACTACAGTCAGCATGAGCACCCATCATGTATTTGTGTACGGCTCACTAAAGAAAGGCCAGCCAAACCACCACGAACTCTTGAACTCTAACAATGGTCAAGCTGAGTTCATCACCTGCGCCCAGACCAAAGAGCCATACCCGCTGGTTATTGCCACCAAACACAACATTCCTTTTCTGCTGAATGTGCCCGGCTCTGGAAAGCAGGTCTCTGGTGAGATCTACAGCGTTGACCAGAAGATGCTGGAGTTCCTGGACTGGTTTGAGAAATGTCCAGACTGGTACCAGCGCACTTCCATCCAGCTGGAGATCCTAAAGGGGAATGGAGAATCTGGAAGAATTGAGGAGGCTTCTGTCTACAGCAAAATAAATTTTGAACCCGACTGGCTCAACAAGCCCACACATGAAAGTTATGATACCAATGGTGACCATGGACTGAAATTTGTGTGTCGAGAAGACAGGAAAGATGATTAACTTGTATATCTGGGTCTGTACCATGAAGCCAGATTAGCTCTCAACAGttaagtttaagtttagtttagtttgcacCTATCCTGGGTTTTAGGTACCATGAAGGCAGCTTGACTTTAATCACTTTGTTACTTGTGGTAACGACTAACCTGCTCCAGGTAAGTTTATATTCCAGGGTTGCATTCCGGATGTCTATACTAATCCCGATAAAtttgaaaatgtcattttcatCTAAAAACACTCCATGTCCACACTCgtttccgatttttttttttgtcatccatacaaaaatgattgaaatgcttttattcatgtactgttttaCCTCCATCACATCCGCCTGGTGTTTATTTACTTTGTCTTTTTGAAATGTTGCAGCAAAAACATGTCACAACTGTGGTCTGCTTCCTCTGCTGAACAGCAGCTTACACTAAACATTCCCTGTCCTTTGAAGAGAGGCAATATGGAGCATGTACAAACGGACAATAATCTTTAATACTGCGTCACATGACTAAAATCCATAATTGTTTTCGAAAGCCTCTGTCTTCAAAGCCCACACTGCAACATGAAAATGACTATTTCAAATTTGTCCACTTTGGGCCATGTCCActctaatatttttgttttaaattgcatCTTTTTCTCTGTTTTGATCTTTCATCCACAATGAGACAGTGTTTTAaggaaatgaaaacatttttttgaaaacactgtccaAAGTAGTGGTGGGCAGAGTGAGGGtttgtgaaacactgaaacagtcgaagcaaatgtgttgaAGCTTCTTAATGTTTTGAAACCTCTCTCTATAGTGACACCTAGTGATCATTTTCTGTATTTCTCGGATAGCTTTAGCAAAGAAACAGTGATGTAAATTAAGATATTAAACGTTGTCAGGTTTAgttttcaagtgatttagtggagcGGTGAAAGTTCCTGATTTGCATAACTTGGGTGTTTTGGATTATGCTTTGGTGCAGTGTTTGGGCTTCGTgatcttaacattgtcaacatCAGTTTCGCATCAGCCATCCTTAGACCAAAGTGGACAAATTTAAATATGATTATGGTG
>TCONS_00001508
AAACGTGAAAGCCGGAACTGCTTAAGTAACTGCCGAACGAAGTTTAGTTCGTCATGTTTGTCCGATGAAGATCAAACTTTCAGTGTGACTTTTAAATATAAAAGGATTTCCTAAATGTTCGGTCTTAGTCATGAACAGTACAATGAATACTACAGTCAGCATGAGCACCCATCATGTATTTGTGTACGGCTCACTAAAGAAAGGCCAGCCAAACCACCACGAACTCTTGAACTCTAACAATGGTCAAGCTGAGTTCATCACCTGCGCCCAGACCAAAGAGCCATACCCGCTGGTTATTGCCACCAAACACAACATTCCTTTTCTGCTGAATGTGCCCGGCTCTGGAAAGCAGGTCTCTGGTGAGATCTACAGCGTTGACCAGAAGATGCTGGAGTTCCTGGACTGGTTTGAGAAATGTCCAGACTGGTACCAGCGCACTTCCATCCAGCTGGAGATCCTAAAGGGGAATGGAGAATCTGGAAGAATTGAGGAGGCTTCTGTCTACAGCAAAATAAATTTTGAACCCGACTGGCTCAACAAGCCCACACATGAAAGTTATGATACCAATGGTGACCATGGACTGAAATTTGTGTGTCGAGAAGACAGGAAAGATGATTAACTTGTATATCTGGGTCTGTACCATGAAGCCAGATTAGCTCTCA
>TCONS_00001509
CCGGAACTGCTTAAGTAACTGCCGAACGAAGTTTAGTTCGTCATGTTTGTCCGATGAAGATCAAACTTTCAGTGTGACTTTTAAATATAAAAGGATTTCCTAAATGTTCGACCCCTCATGGTTTAGGTAATTTGCAAattttaaaagtgagtaaattctGACTCCTagctcttcatcatcttcatcatccctGCTGTCCGCATGCCTCTTGTGTTTGTGTACGGGACACTAAAGAAAGGCCAGCCGaattattttagattgattgacTCTAGCAATGGGCAAGCTGAGTTCATCACTTGTGCCCGAACCGTAGAGCCATACCCACTGGTGATCACTGGCGAATGCAACATCCCCTTCCTGCTGAATGTGCCTGGCTCTGGACAGCGGGTCTACGGTGAGATCTACAGCGTTGACCAGAAGATGCTGGAGTTTCTGGACTGGTTTGAGGAATGTCCAGACTGGTACCAGCGCACCCTCATCCAGCTGGAGATCCTGAAGGGGAATGGTGAAACTGAAGTTGAGGAGGCTTTTGTTTACACCAAAACTAAATATGAACCCGACTGGCTCAACAAGCCCACATATGACAGTTATGATAGCAACGGTGATCATGGACTGAAATATGCATATGAAGAAGACATGACAAGGTCTACATTAGatcagaaatctgcagatttttcacaaaattctgagcaagaaattaaaaaaaacaacagtctGCAGATTCTGACGAGTACTGGAGATGATCATGATGTAAACTTCAGAGGCCCACTTCAATAAgacaaattcaatttaattaaatgaaaactaGAACTTTAGTTGACCTACTCTAATGCCAAGTTCACACTGCACGATTTTCACTCGCCGACAGTTTTTGTGAAATTGCAGACAAATGCCCGAAATCGGAAGTCAGTCAGTGCTCATTCAAGCTAAAGTCAGTCACACAGTAGGAAAGATGCAAACTGAGAGGATCGCTAGCGTGTCACCATCGTCTGTGAAATATTCAACATGCTAACTATCTAGATATGTCAGCTTTTCAAAGTCCTGCTTGTGAATGAGTTCTGATTGAACTCTTTTTGTATTATTTCTAGTCTCGCACATAGTTTTGTGTTAATTTCTTATCACTTCTTGTGTGTTTACAAGTAGTCAGCCACTGTTTTGAGTGTAGTCCTGCAATGTTTGTTCTAATGTCACTGATCATTCATACAGTATAAACACAGCAGCAACTGAACGCTACCTCAGAGAGTGATGCATTGTCAAAACAACGGCGAtccaaatactgtgaaaatcatGCAGTATGAACTCAGCACAAAATGGGAAACTAAAGCCATGTTCACGTACACAGGTATTTTTATAAGCAGAATGCTCCTGCTTTTATTTTTAAGGAAATCTCTGTCCACATAAAAACACACTGCAACGCATGTTAAGGGCATGCCGAACCAacaagtttcacaaactaatttccgGAAGAGCGTGGGATGTGATTGATCACATCTTCATTGATTTGCACAttttgcatttggtgtgaactcagctgtgtcagccaatcagagaagTGTGCATGCTGATGTCATGAGGCAAAACCTCCACATGACCACACTGTACCCGGAGTTTCAGATAAACCTTTAACTTGGCCGAAGTTTTCAGAAGTATTCATGTTCAGTCACCCGATACTATGGACAAACAGTGAAACCGGttaaaaaaaagtgctgttttGAAAATACCCATGTTTGTGTGGACTGCCTGAGTTtttggtttcagaatagctgaatTGAGTGGGTTCATGTGAGGAATATTGTAGTTTTAGCAGAGATTAAATCTCGATTTATGACTAAAGGATTTGATTTGTGAATTAAAACCATGTTAAACGATGTTTGTCAAACATCAGATGTCTGAATGGTGATTTAGTTACACATTAGgctgttttttatattaataataatgacttatTGGGACTAAATGTGGTTTTGGACATGGATTTGTTTTAGTTGTCATATTTAGTTGAGTACCATGAAAAGTAAATGTGATTTACTGAGTTTATATGAAACTTTAGTTTGAAGTACCAAGTAATCTGGAAAAAGTAAtcataaaaaatctatttatgattcattatacacatacatacatgattatgtaaaaaaatgattGAATCTAGATATTGTACATTGTGTTTTATGAGTTTATTAGTTTGCACTTTACAATAAAATCATTCAATCTGAACAGCTTTTCATTGTTTTGCATCA

Function

symbol description
ggact.3 Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0061929 gamma-glutamylaminecyclotransferase activity molecular_function
GO:0016829 lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-8 Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).
ZDB-GENE-070424-26 Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).

Ensembl:

ensembl_id ENSDARG00000038248 ENSDARG00000070579

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001506 False 1688 mRNA 0.40 2 2446996 2449395
TCONS_00001507 False 1568 mRNA 0.40 1 2447025 2448592
TCONS_00001508 False 662 mRNA 0.45 2 2448051 2453185
TCONS_00001509 True 2240 mRNA 0.38 2 2450140 2453174

Neighbor

gene id symbol gene type direction distance location
XLOC_000946 si:ch211-235f1.3 coding downstream 112742 2331637 ~ 2334254 (-)
XLOC_000945 NA coding downstream 195960 2239211 ~ 2251036 (-)
XLOC_000944 NA coding downstream 345735 2093996 ~ 2101261 (-)
XLOC_000943 oxgr1a.2 coding downstream 371467 2074513 ~ 2075529 (-)
XLOC_000942 oxgr1a.3 coding downstream 385577 2060430 ~ 2061419 (-)
XLOC_000948 ggact.1 coding upstream 909 2454094 ~ 2457546 (-)
XLOC_000949 NA coding upstream 41836 2495021 ~ 2502744 (-)
XLOC_000950 CU986306.1 coding upstream 251419 2704604 ~ 2714275 (-)
XLOC_000951 gpc5a coding upstream 647059 3100244 ~ 3295045 (-)
XLOC_000952 NA coding upstream 843422 3296607 ~ 3299853 (-)
XLOC_000940 NA non-coding downstream 441461 2000666 ~ 2005535 (-)
XLOC_000938 NA non-coding downstream 710432 1731517 ~ 1736564 (-)
XLOC_000936 NA non-coding downstream 863790 1555296 ~ 1583206 (-)
XLOC_000953 CABZ01113467.1 non-coding upstream 852364 3305549 ~ 3330435 (-)
XLOC_000954 NA non-coding upstream 1391651 3844836 ~ 3846864 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_00452374_00452868 NA coding CI01000299 null 451341 ~ 452868 (-)