XLOC_000948 (ggact.1)


Basic Information

Item Value
gene id XLOC_000948
gene name ggact.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2454094 ~ 2457546 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001510
CAGTTTGATCTGTCAAGGGACTTTAAAGCAGCTCTGTTCGTCCGACGTTGATAAAACTTTCAGTCTGACCTCTGAAAATGATTGCAATCCATATATTGCTGCTGGTTTTCTCAAATATTGTGCTCCCTGCATTGTGCATTAACGTGTTTGTGTACGGCACACTAAAGAAAGGCCAGTCAAACTATCATGAACTGACAAACACTACACACGGTCAAGCTGAGTTCATCACCTGTGCCCGGACCAAAGATCCATACCCTATGGTGATCGCCACCAAAGACAAATTCCCCTTCCTGCTGAATGTGCCTGGCTCTGGACAGCAGGTCTACGGTGAGATCTACAACGTTGACCAGAATATGCTGGATTTCCTGGATGAGTTTGAGGAATGTCCAGATCTCTACCAGCGCACCTCCATCCAGCTGAAGATCCTGAAGGGGAATGGAGATTCTGAGGAGGCTTTTGTCTACAGCACCTCTACATTTGATCCTGACTGGCTCAACAAACCCACATTCAGTGTTTATGATGCCACCGGTGATCCTGGAAACAATTGTGTGCCTCGAGAATAAGAGAATAATAACTTCTGGTAGAGCTTGGGCGATGGATCTTTTTCACAATATCAGGTTTCTCAGCAGCCATCAtatttgggtaaacttagagcacagtgaatgaggaagtacaacaaatcattatttacaatcttatttgttgaaataataaaagaaaaactacacaatggtgttatcaagactttcataGGAAGGAAAACagtagtgtgagactgataacagcagccagaagagagaattattaataattaaaagaatATTTAATGATTAAGAAGAATtcaatttactgtcctgtcctcCAATAGACACTGAATTTTAAACGTCTTGCAAAAacggtaatttatttatttttgtaatttgatgcaaatatgatataatacacacataaatgCATGTACATGGTTATATTTGGttatgttttaaaaatcaaaatattaaaaacatttaaggatttaagattCGTAAATGCAACATAACAGACTTGTGAAAAGGGTccgttaattgaaataaaatcacAAACACTGTTAAGCAATGTTGGGATATTCATACACATCTTGTCAGTGAAGCACAGTTCCATGATCTGTAGTAAATCCctttaaagtccctttaaggcaagtaatttccaTAAAAACTTACCTAAGTTTGAAGTCAAAGCATGTTATAAaatgtgataataataatgactgataaTAATGATTTGTTGTTACTTAATTGTTCATTTTGTAGCCGGATTCTTTATTTGGTGTTGGGTGGTATAATTTAACGGCATGCAAAACAAATAGGGTGAATTACTGTGTGTTATATGGCACTTTATTACAATTTACCAGATGCAGGAACGCTTTAGATTATTAAACTGGACACAATCTTTAAGATCTATTTTTATAATGTATGATTtgcacaaaaatgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatataaattgtgTAAAAATTATTTGATTGAAATATGTTGTGCTTTATTAGGGGAAAAACACTGGAGTACTTTATATGTAGCGATCAGGAATTATCTTTCTGTGAATAACTGTACAATACTGTGTACTACTGTATACAATATACTTTATACTTTCATGAGTAAATTGAATTGcactttacattaaaataatttcttcTGAAGCACAGTGCTGATTGTTTTATGAACAAATAACAAAATCTGAAGATTTTTTT

Function

symbol description
ggact.1 Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061929 gamma-glutamylaminecyclotransferase activity molecular_function
GO:0016829 lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-94 Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).

Ensembl:

ensembl_id ENSDARG00000070581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001510 True 1790 mRNA 0.34 2 2454094 2457546

Neighbor

gene id symbol gene type direction distance location
XLOC_000947 ggact.3 coding downstream 909 2446996 ~ 2453185 (-)
XLOC_000946 si:ch211-235f1.3 coding downstream 119840 2331637 ~ 2334254 (-)
XLOC_000945 NA coding downstream 203058 2239211 ~ 2251036 (-)
XLOC_000944 NA coding downstream 352833 2093996 ~ 2101261 (-)
XLOC_000943 oxgr1a.2 coding downstream 378565 2074513 ~ 2075529 (-)
XLOC_000949 NA coding upstream 37475 2495021 ~ 2502744 (-)
XLOC_000950 CU986306.1 coding upstream 247058 2704604 ~ 2714275 (-)
XLOC_000951 gpc5a coding upstream 642698 3100244 ~ 3295045 (-)
XLOC_000952 NA coding upstream 839061 3296607 ~ 3299853 (-)
XLOC_000953 CABZ01113467.1 coding upstream 848003 3305549 ~ 3330435 (-)
XLOC_000940 NA non-coding downstream 448559 2000666 ~ 2005535 (-)
XLOC_000938 NA non-coding downstream 717530 1731517 ~ 1736564 (-)
XLOC_000936 NA non-coding downstream 870888 1555296 ~ 1583206 (-)
XLOC_000954 NA non-coding upstream 1387290 3844836 ~ 3846864 (-)

Expression


Co-expression Network