XLOC_009484 (spsb4b)


Basic Information

Item Value
gene id XLOC_009484
gene name spsb4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41670742 ~ 41689981 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018635
TGGCCTAGTATGACGTCACGCACTTACTGGCTTGCGGAACAAAAGCCGTCTGCTCGCTGCGCTCCTCCCGCCGGATGCAACCGACAGGACACCAAGACCTTCGTTTCCcgtaaaagtttgtttttaaagcGTTTACCGTATTGTGTGTTAACATAAACAGCGTCGAAGTGTAAATCCCGGGGCTCGTGACGagtattttttttgtctgaacTCAACCGACGAGGGATTCTCGCGAGAGAGTGTGAGACTAATAAACGCTGTCCGGCTGACGTGGACCCTCCTGGAGTCCTGTGGTGATCTGGAAGGTTTGCTCTCTTCCATCTGAACGTGTTCTTGTGAATGAGACTGTGTCGTctcttctgattggctgaggCTCTCGGGTCGGCTCTGCTCATGAGGTAACACAGCCTGTGGTTGTTGATGCCCGAGGCTGGGCAGTGATGGGGCAGAGGGTATCGGGTGTGGTCAAATCAGCGGATGAGCAGGAGGTGGGTGAGCTGGCGTATCCACCAGTGTGTGCGGCGCTTCGAAATCGAGGTGTCCCTTTACCTGCCCGTCTGGAGCTGCTGTTGGATATGCCTCCGGCTGGTTCGGAAGCCCAGCTTCAGCACGCCTGGAACCCAGACGACCGTTCGCCAAACCTGTTTATCAAAGACGATGACCGGCTCACGTTCCACCGCCACCCGGTGGCCCAAAGCACTGACTGTGTGCGCGGGAAAACCGGCTTCACCCGAGGTTTGCATGCATGGAGTTTACGATGGCCTGTACGGCAGCGGGGCACTCATGCTGTGGTTGGAGTGGCCACTTCTTTAGCTACTTTACGAGCTGTTGGGTATTCTGCTCTAGTTGGAAGTGATGCTGAATCCTGGGGGTGGGATTTGGGACGAGGTCGGCTTTACCATGATCGAAAGAGCCGATCTGGGCCAGCGCCGCCGTATCCGGAGTTCGTGGAAGATGAGGATGAGGAAGGCACGTTCTCTGTGCCGGAGGAGATTTTGGTGGTGTTGGATATGGACGAGGGAACGCTGGGATTCTGTGCTGATGGAAATTATCTGGGAGTGGCGTTTCGAGGGCTGAAGGGGAAGAGGCTGTACCCGATCGTCAGCGCTGTCTGGGGCCACTGTGAAGTCAGCATGAACTACATCAACGGATTAGAtcCTGAACCCCTGCCGCTGATGGAGCTGTGCAGAAGAGCAGCGCGACAGGCACTGGGACGCCACCGAATCCATCACATCCAGTCTCTGCCACTGCCACAGACACTCAAAAACTACCTGCAGTACCAATGAGAGACTCAAACACGCACCTGCGGTCACTGGACACGAGCTGTAGAGTCTTTGCACAGATACGCTCATATATTTAGGATGCCATCAAACGATGAGTACCTGGTTTTTATACATGATTATGAGATGATTGTAATAAAAGGTGTTTTACGTTCATGTCTTCCGTGGAAATATTACTCTTGAGctgatgttttttattattgttcttcACTTTTAACTCAGAACTAAGGACTaaggaaaacaaacagacaaCGAGGTTCTTATTCTGTCACCAGTCTTCACTAATAGACATCCGCAGTGCCTGAGATCTTTTAcaatctttgttttgtttgtttgcgtgcgtattaaatatatatatgtatattttctgTTGTAATCATGACGAAGCTGATTCAATCGGTTTTTAAGCGTATAAACGCGAGGCTTGTTgagatttttacagattttttatatgaatttgatGTTCCTCTTTTACATCACAGATCAAGCAGAAACACAACAGTTGTACATTCATGACCTTTCAAAtgtgaataaaatgaaaacttaaaacaCACAA
>TCONS_00018636
CTGCTCATGAGGTAACACAGCCTGTGGTTGTTGATGCCCGAGGCTGGGCAGTGATGGGGCAGAGGGTATCGGGTGTGGTCAAATCAGCGGATGAGCAGGAGGTGGGTGAGCTGGCGTATCCACCAGTGTGTGCGGCGCTTCGAAATCGAGGTGTCCCTTTACCTGCCCGTCTGGAGCTGCTGTTGGATATGCCTCCGGCTGGTTCGGAAGCCCAGCTTCAGCACGCCTGGAACCCAGACGACCGTTCGCCAAACCTGTTTATCAAAGACGATGACCGGCTCACGTTCCACCGCCACCCGGTGGCCCAAAGCACTGACTGTGTGCGCGGGAAAACCGGCTTCACCCGAGGTTTGCATGCATGGAGTTTACGATGGCCTGTACGGCAGCGGGGCACTCATGCTGTGGTTGGAGTGGCCACTTCTTTAGCTACTTTACGAGCTGTTGGGTATTCTGCTCTAGTTGGAAGTGATGCTGAATCCTGGGGGTGGGATTTGGGACGAGGTCGGCTTTACCATGATCGAAAGAGCCGATCTGGGCCAGCGCCGCCGTATCCGGAGTTCGTGGAAGATGAGGATGAGGAAGGCACGTTCTCTGTGCCGGAGGAGATTTTGGTGGTGTTGGATATGGACGAGGGAACGCTGGGATTCTGTGCTGATGGAAATTATCTGGGAGTGGCGTTTCGAGGGCTGAAGGGGAAGAGGCTGTACCCGATCGTCAGCGCTGTCTGGGGCCACTGTGAAGTCAGCATGAACTACATCAACGGATTAGAtcCTGAACCCCTGCCGCTGATGGAGCTGTGCAGAAGAGCAGCGCGACAGGCACTGGGACGCCACCGAATCCATCACATCCAGTCTCTGCCACTGCCACAGACACTCAAAAACTACCTGCAGTACCAATGAGAGACTCAAACACGCACCTGCGGTCACTGGACACGAGCTGTAGAGTCTTTGCACAGATACGCTCATATATTTAGGATGCCATCAAACGATGAGTACCTGGTTTTTATACATGATTATGAGATGATTGTAATAAAAGGTGTTTTACGTTCATGTCTTCCGTGGAAATATTACTCTTGAGctgatgttttttattattgttcttcACTTTTAACTCAGAACTAAGGACTaaggaaaacaaacagacaaCGAGGTTCTTATTCTGTCACCAGTCTTCACTAATAGACATCCGCAGTGCCTGAGATCTTTTAcaatctttgttttgtttgtttgcgtgcgtattaaatatatatatgtatattttctgTTGTAATCATGACGAAGCTGATTCAATCGGTTTTTAAGCGTATAAACGCGAGGCTTGTTgagatttttacagattttttatatgaatttgatGTTCCTCTTTTACATCACAGATCAAGCAGAAACACAACAGTTGTACATTCATGACCTTTCAAAtgtgaataaaatgaaaactt
>TCONS_00018637
AAAGCATCTGATCACCTTCAGTTTATATGAGATTATGCTTTCTGATTTTTGACCATGTCATATATGATTTCATGATTAAAGCATCCAGGATATTTTATTGTCACATGTCAGCCACAGTTTTGGCCTTTAAGCTCCTGTAAAACTCATTGTTTCGCTTTCACATAGATGTAAACATAGTGTGGCGGTTAACGTTACTTGTGAAAATTCAGGAGTGTGAGACTAATAAACGCTGTCCGGCTGACGTGGACCCTCCTGGAGTCCTGTGGTGATCTGGAAGGTTTGCTCTCTTCCATCTGAACGTGTTCTTGTGAATGAGACTGTGTCGTctcttctgattggctgaggCTCTCGGGTCGGCTCTGCTCATGAGGTAACACAGCCTGTGGTTGTTGATGCCCGAGGCTGGGCAGTGATGGGGCAGAGGGTATCGGGTGTGGTCAAATCAGCGGATGAGCAGGAGGTGGGTGAGCTGGCGTATCCACCAGTGTGTGCGGCGCTTCGAAATCGAGGTGTCCCTTTACCTGCCCGTCTGGAGCTGCTGTTGGATATGCCTCCGGCTGGTTCGGAAGCCCAGCTTCAGCACGCCTGGAACCCAGACGACCGTTCGCCAAACCTGTTTATCAAAGACGATGACCGGCTCACGTTCCACCGCCACC

Function

symbol description
spsb4b Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB4 (splA/ryanodine receptor domain and SOCS box containing 4).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-213 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB4 (splA/ryanodine receptor domain and SOCS box containing 4).

Ensembl:

ensembl_id ENSDARG00000040538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018635 False 1836 mRNA 0.49 4 41670742 41689981
TCONS_00018636 False 1438 mRNA 0.49 2 41670753 41677689
TCONS_00018637 True 656 mRNA 0.50 3 41677393 41689684

Neighbor

gene id symbol gene type direction distance location
XLOC_009483 NA coding downstream 3387 41640441 ~ 41667355 (-)
XLOC_009482 CR925731.1 coding downstream 127302 41529260 ~ 41543440 (-)
XLOC_009481 si:ch211-187g4.1 coding downstream 183949 41471175 ~ 41486793 (-)
XLOC_009480 nlrc8 coding downstream 231921 41422248 ~ 41438821 (-)
XLOC_009479 CR854897.1 coding downstream 262594 41400520 ~ 41408148 (-)
XLOC_009485 si:ch211-276c2.4 coding upstream 3654 41693635 ~ 41708657 (-)
XLOC_009486 ftr90 coding upstream 21746 41711727 ~ 41744848 (-)
XLOC_009487 ftr76 coding upstream 26740 41716721 ~ 41720215 (-)
XLOC_009488 ftr73 coding upstream 56739 41746720 ~ 41749364 (-)
XLOC_009489 ftr72 coding upstream 62354 41752335 ~ 41756507 (-)
XLOC_009478 CR854897.2 non-coding downstream 274669 41393401 ~ 41396073 (-)
XLOC_009474 NA non-coding downstream 424733 41238245 ~ 41246009 (-)
XLOC_009472 NA non-coding downstream 598545 41068774 ~ 41072197 (-)
XLOC_009494 NA non-coding upstream 363858 42053839 ~ 42058846 (-)
XLOC_009495 CR925728.2 non-coding upstream 374202 42064183 ~ 42066345 (-)
XLOC_009496 CR925728.1 non-coding upstream 390413 42080394 ~ 42086212 (-)
XLOC_009497 NA non-coding upstream 415461 42105442 ~ 42106950 (-)
XLOC_009498 LO018107.1 non-coding upstream 446106 42136087 ~ 42139836 (-)

Expression


Co-expression Network