XLOC_000949


Basic Information

Item Value
gene id XLOC_000949
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2495021 ~ 2502744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002901
CATGCAAGCGTTTTCACTGAATAAGCCGCAGAATTGTCCAGCAGACGGTGAAGTGTTGCTTGAGGCTGAGTGCTGCACACAACCTGCATTTACGGCCACAGAAGATGAAGACTTTCATTGGAAGTGACAAGAGAAGGTCCAGACGGATGGCTTTGCTTGAGATATGTGACGCTGCGGGGTTTGACTCAGATGGGGAATAGTTTGAACTTTTTACGTGCGAGACGCTCACAACAGGAGTCGGACCATACATGAAATGCTCTGCCGTGTCAACAATACCGAATGTAGGCCAGCCGAGAATTCCCAGCGACAACAAAGGTCCATCCTCCCGGTGCCATCTGCCACAGCCATAAAAAGGGAACCGGGGTGCGTGACAGACTGTTTTATTTGACTTGGAGGGGCTAATTTGGATTAGGGAGGATTTGTGTCCCTGCTGTGAGTCCGGGCCTGTTTGCGAAGCGTCTTGCGGAAAGTAGATGTGATGCGTGAAGTCATAAAAAGAATCCTCCGGCTGTCTGTCAGCAGCATCACTCATGGACGTGTAAAAGCGGATCCGTCTCTGCTGTTTAATCCTGCTTCTCCAGCATCCAGTCGTGTCTCATCTTACCCGCGTGTCAGCTGGGTCTCCACTAGTCGTCCTCAAAGGGTTTTGAAGCGAGAAGTCAGGTGACGTCCGCACTGATGTTTCTGCTGCTTCCCGACACACGTTTGCTCGGGGTATTGGAAAGCTTTATCATCAAAGCGGAAAGTTTCATTTTTCATCCCGGCTCAGATCCAAGGTCCTTCTGACGCTCAGGACGCTACAAGCGTCCGTTTTAAATCCtcacaaaacaaaatcaaaactcTCAGATACTTTTTAAAGCACTTTGTATTTTGTTTAGACACTGTGTGAATTACAATGAGGGTCAGGAcatgtttgtttgtatacttCCGGAGCATTTCACCTTATTTAAAGGGATCTATCAtgcaaaaaatcacttttatcagaggtttaaacagttgtgtgcaAATATATCCAGCCTCCAATGGTAATTCAATGTTTAATAATCAAGCTTgcttaaaacactttgattgatattttccctttgtacgtgtctTCAAACTGGGAgagccccacccactagtgaccatctctccctcattagcataaaaagccctaagtgagaagcagccatccgtcATTAAAGTTTTCGCATCACACCTGCTAAAATAATGTCAGCGACTATGAAGCATTATAAATGGAgtttttaggatgcacaaatgaacactgtatTTTCCATATACTTTCTCCTGATTTTCTTTTCAGAGATAacttgttttgaatctgccactatgctgatgcgttggcatttgtagctccacccttttTTGAAAAGcatctcatttgaattttaaGTGAAAGTCACggaaatggcacaatttggattaaagcctaaaagggtcagttttagAGTCATAAAGCaatatctgtgtggtattttgagctgaatcttcacATACACATACTAAAGACATCAGAGACGCTTGTTATATCTTAAaatggggcataataggtccttttaaggtgcagtatgtaaatttgacacccagttgttgaactaggtattgcacacttGGATCTAAACACATATAAGTGCATGTGTTTAGATAATATCCtttttctgaatggatcatttaaatta
>TCONS_00003305
ATGCAAGCGTTTTCACTGAATAAGCCGCAGAATTGTCCAGCAGACGGTGAAGTGTTGCTTGAGGCTGAGTGCTGCACACAACCTGCATTTACGGCCACAGAAGATGAAGACTTTCATTGGAAGTGACAAGAGAAGGTCCAGACGGATGGCTTTGCTTGAGATATGTGACGCTGCGGGGTTTGACTCAGATGGGGAATAGTTTGAACTTTTTACGTGCGAGACGCTCACAACAGGAGTCGGACCATACATGAAATGCTCTGCCGTGTCAACAATACCGAATGTAGGCCAGCCGAGAATTCCCAGCGACAACAAAGGTCCATCCTCCCGGTGCCATCTGCCACAGCCATAAAAAGGGAACCGGGGTGCGTGACAGACTGTTTTATTTGACTTGGAGGGGCTAATTTGGATTAGGGAGGATTTGTGTCCCTGCTGTGAGTCCGGGCCTGTTTGCGAAGCGTCTTGCGGAAAGTAGATGTGATGCGGTAGGTTCGCCGTTTGCCTCTCGATAAGATAAAACAGTAAGCCGGGGGGGAAAATCAGGGGGAAAATCGCATTTAAGCCAGTCTATTGAACTGTGGAGGTAAACAATGAGGATTTAGACCCAGACGGAGTAAAGATGAAACACCTCAAAGTAATATTTGCAGATTGCCTGTATCACAGAGCGCATATTGCAACCAGCGCTTTCCAAGCAGAACCTGCTGCCGACAAATGTTTGTCCAGTTCTGTGAATATGAAgacttttttatttctctttaatGATGGGAGTTTTGATATGAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002901 False 1679 lncRNA 0.43 3 2495021 2502744
TCONS_00003305 True 778 lncRNA 0.47 2 2497873 2502743

Neighbor

gene id symbol gene type direction distance location
XLOC_000948 ggact.1 coding downstream 37475 2454094 ~ 2457546 (-)
XLOC_000947 ggact.3 coding downstream 41836 2446996 ~ 2453185 (-)
XLOC_000946 si:ch211-235f1.3 coding downstream 160767 2331637 ~ 2334254 (-)
XLOC_000945 NA coding downstream 243985 2239211 ~ 2251036 (-)
XLOC_000944 NA coding downstream 393760 2093996 ~ 2101261 (-)
XLOC_000950 CU986306.1 coding upstream 201860 2704604 ~ 2714275 (-)
XLOC_000951 gpc5a coding upstream 597500 3100244 ~ 3295045 (-)
XLOC_000952 NA coding upstream 793863 3296607 ~ 3299853 (-)
XLOC_000953 CABZ01113467.1 coding upstream 802805 3305549 ~ 3330435 (-)
XLOC_000954 NA coding upstream 1342092 3844836 ~ 3846864 (-)
XLOC_000940 NA non-coding downstream 489486 2000666 ~ 2005535 (-)
XLOC_000938 NA non-coding downstream 758457 1731517 ~ 1736564 (-)
XLOC_000936 NA non-coding downstream 911815 1555296 ~ 1583206 (-)
XLOC_000955 NA non-coding upstream 1527025 4029769 ~ 4074148 (-)

Expression


Co-expression Network