CI01000048_00261577_00264226


Basic Information

Item Value
gene id CI01000048_00261577_00264226
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 261400 ~ 265542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000048_00261577_00264226.mRNA
GCATTAAAGCTTTATTATCAATACCCCCTACTCATACCCCCTACTCATCAAATGTGAGCGAGGGAACAAGGGCATGTGAATCGGCTTCTCCTTTGCCCAGGTGTGAGGTGACATCCAGTTTTTCCAGAGGGGAACCAGACACCTTGTCTCTTGTGGCCTCTGACTCATTAGATAAGGATGAGCAGGATTGATCCAAGGGTGTATAATAATCCTTATTATACACCCTTGGATGAGACGTTGCCTTCACATTCCCAGTTTCAGTGTTCCCATAGTGACGACGGCTCTGGCCTTCAGGATGCTGCTTCTTCAGTGGTATTCTCACTGCACAATACACTCAAGATGGCGCTCACTAAACAGAATTTGCATCCACCTCCTCCTGTGCCAGGCCATTTAAACCTCTTGCGTCGCTCAGCTTCTCAGCATGAGGATTTCCTAATGCCAAGTTGTCCTGACATTACAAATGTTGCGTTTCGGTCCGCTTCCTCATCCAGACCAGATCGCATGGCTCGCATGCTAGCAGCAATGGCTGAGGCCCAGGAAAAGGGCCTTGGCAACATGCCTCCAGTTGAGTCGTGCATTTCTTCACTGCTTGAGTCCTGCACCCGGATATTTTTCGACTCCCAAGTCGTAATAATGCCCTTAGGGGATCCACTCGAAGCTTCAACAGAGACAACACGAATCCGATACCATCACAGTGGTCTTCTTGCCGTCACCCCCCCTAGAAAGTCCGGCGTACGGACTGTGGACCGCATCGTGCTAGCTAGCCTTGCAAGGCAGGCTAGCACCGGATGCGACGAATGCGGCGTCTCCATTGGGCTGCTTAACGTTCGCTCACTCAACAACAAGGCCTCTCTTGTTTATGATCTGGTGAACGATCATAACCCGGAATTTCTGTGCCTGACTGAGACGTGGCAGCTACCGCAGGACTTCGCCGTGTTTACGTCTGTCAGCCTCATGCCTCTGGACGTGGGGGTGGCCTCGCGATACTTTACAACGAGAAATACAAGGTATCCCCACTCCCAGTCAGCGATCACCAATCCTTTGAATCCTCTGCCATACAAATTTCTGGATCTGTTCCCACCATTTTAGCCACCATCTACAGACCACCGAAACCTAACCCAAACTTTTTAAATGAATTCTCGGATTTTATTTCCACCTTATGCTCCCCACCGCTGAAAACTCGGACTGTCACCTTCACCCGCTCTGCACCCTGGTACACACACCAACTAAAAGTTATAGGCCGCCGTCTCGAACGTCTTTCAAGGAAAACCGGACTCTCTGTTCATAAAGACATGTACAATGAACACCATCTGAAATATAAACTAGCTATGTCGAATGCCAAAACTGTCTATTATACCTCTCTGATCCAAACAGCTGAAGGAAACACACAGACTTTGTTCTTCACACTCAACCACATTATACAGTCCTCATGCATTGGCCCCTCTCATATGTACTCCACCGCCAACTGCAATAGATTTATGAACTTTTTTACATCTAAAATAGAAAACATTCACAAACAATTGTCATCTCCTTGCTCTTCCGTCGACTGTAAATTTTGCCTCTCTTCCATCACACCCCCCCTATCATCACTCTCCTCCTTTCAATCACCCACCATCAATGGTATTATGTCCATCATTCAAAAATCAAAATCATCCACTTGTAAACTCGACCCGCTCCCTACAACCCTAGTTAAACTCTGTCTTCTTTCTCTGTCCCCTCTCATCACTGAAATTATACACTCCTCCCTTACCTCTGGTTCTGTTCCATCACCCCTCAAAACTGCAATAATTACTCCCATTCTCAAAAAACCTGGTGCTGATCCAAATAATCTCAACAACTTCCGACCAATTTCTAACCTTCCATATCTCTCAAAAATACTTGAAAAAATAGTTGCCTCACAGATCCATAATCATCTCACTAACAATAACCTCTATGAGCAATTTCAATCTGGCTTCCATCCACTTCACAGCACCGAAACAGCCCTAGTTAAAATCACCAATGACCTTCTGATTGCAGCAGACTCTGGACTACTCACAATACTTATCCTCCTTGACCTAACCGCAGCCTTCGACACAATCTCTCATCACATCCTCCTCAACCGTCTACTCTCCATTGGTATCAATAACACAGCCCTGTCCTGGTTCTCATCTTACTTGTCAGACCACACACAGTTTGTTCAGTTAAAGAATTTTCACTCCGATACTTCCCCAGTCAAATGTGGTATGCCCCAGGGCCCTTGGGCAATATTTTCAAGAAATTTGGTATCAACTTCCACTGCTATGCGGATGACACCCAGCTCTACCACTCCTCTAAACCGACCGCTTCACTCCCTCCCTCATCCCTCCTTGACTGTCTTCAAGAAATTAAAATATGGTTTTCCCACAACTTTCTACAACTTAACGACA
>TU232003
GTCGAATGCCAAAACTGTCTATTATACCTCTCTGATCCAAACAGCTGAAGGAAACACACAGACTTTGTTCTTCACACTCAACCACATTATACAGTCCTCATGCATTGGCCCCTCTCATATGTACTCCACCGCCAACTGCAATAGATTTATGAACTTTTTTACATCTAAAATAGAAAACATTCACAAACAATTGTCATCTCCTTGCTCTTCC

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000048_00261577_00264226.mRNA False 2405 mRNA 0.46 2 261400 265542
TU232003 True 211 lncRNA 0.39 1 264468 264678

Neighbor

gene id symbol gene type direction distance location
CI01000048_00149401_00154452 NA coding upstream 106948 149401 ~ 154452 (+)
CI01000048_00036432_00113057 PSIP1 coding upstream 148343 36432 ~ 113057 (+)
CI01000048_00005001_00005627 NA coding upstream 255383 5001 ~ 6017 (+)
CI01000048_00403297_00404487 NA coding downstream 137690 403232 ~ 404614 (+)
CI01000048_00425103_00519682 NA coding downstream 159561 425103 ~ 519890 (+)
CI01000048_00567988_00568484 NA coding downstream 302446 567988 ~ 569052 (+)
CI01000048_00659494_00667971 NA coding downstream 393480 659022 ~ 670072 (+)
CI01000048_00693752_00694265 NA coding downstream 427530 693072 ~ 694474 (+)
G204390 NA non-coding upstream 4857 255979 ~ 256543 (+)
G204379 NA non-coding upstream 31351 229746 ~ 230049 (+)
G204373 NA non-coding upstream 37039 216170 ~ 224361 (+)
G204231 NA non-coding upstream 112123 148680 ~ 149277 (+)
G204227 NA non-coding upstream 168803 51098 ~ 92597 (+)
G204401 NA non-coding downstream 3014 268556 ~ 268816 (+)
G204402 NA non-coding downstream 5432 270974 ~ 271195 (+)
G204403 NA non-coding downstream 5947 271489 ~ 271703 (+)
G204404 NA non-coding downstream 8006 273548 ~ 274177 (+)
G204392 NA non-coding downstream 10847 276389 ~ 277902 (+)
G204233 NA other upstream 197803 63188 ~ 63597 (+)
G204409 NA other downstream 19728 285270 ~ 285747 (+)
G204472 NA other downstream 95483 361025 ~ 361661 (+)
G204824 NA other downstream 727913 993455 ~ 993969 (+)
CI01000048_01214358_01215546 NA other downstream 948830 1214358 ~ 1215807 (+)
G204396 NA non-coding upstream 992 263174 ~ 263476 (+)

Expression


Co-expression Network