XLOC_000951 (gpc5a)


Basic Information

Item Value
gene id XLOC_000951
gene name gpc5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3100244 ~ 3295045 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001512
ATGGAAATGGCGATCCGTGGAattttgttttatacattttttgcgGTTTTCACAGATGTCTGTCAGGGGACTTTAATGGACTGCGAAGAAGTGCGTAAAGTTTTTCAGTTGAAACAAATCGGACCTGCAAAATCAATACCTGACACGCCGAGAACAGGTTCAGACCTGCAGGTTTGCTTATCCAGGAATCTAACATGCTGCACCAAAAAGATGGAGGAGCGTTACCAGGTGGCGGCCCGGCGGGATATTCAGAACCTTCTCCAGATCTCTAGCTCCAGCCTAAAGTTCCTCTTCTCACGAAATGTGGCCGCTTTCCAAGAAAGCGTGGAGTCTCTGGTGCGTCAGGCGGAGAACCACACCCTCTCCATCCTCCATCAGTCCCAGCGTGATCTCTCCAGCCCAGCAGCATCAGCACCAGTCGGGGAGTTTTTCACAGAAGTGGCTCTGTTCATCCTGGGCTCTGAGCTCAGTCTAGAAGAGTCCTCTCAGAGCTTCTTCAACGCTCTTTTCCCCTTAATATACGAGCGTCTGATTGACTCCCGTCTGTCTCCTCCATACGCCGAATGCCTGCGCTCGTCTGCTCAAGATCTAGCACCGTTCGGAGCAGCCCCAATCCGCCTGGCGTCCCAAATCGCCCATGCTTCTCTACCTGCTCGCGTGTTTCTCCAAGCGCTCCATTTGGGCATCGAGATCATAAATACGACCGATCACATCCAGCTGAGCCGCGAGTGCAGACGTGGCCTACTGAGGATGAGCTACTGCCCGCACTGCAAGGCTCTGACCTCCAGCAAACCCTGCTTGGGATACTGCCTGAACGTGGTGCGCGGGTGTCTGGCTAACCTGGCTGAAGTGGATGCCCACTGGAGGGAGTTTGTACGCTCGCTGGAGACGCTGGCAGTACGGATGCACGGAGAGCTGGATCTGGAGCAGGTGCTGCTGGGGGCGCATGAGCTGGTGAGGGACGCTGTGGCGCACGCTCAGAGGAGCACAGCGAGGATACATGCGCAGGTGCAACGTGTGTGTGGTCAGTCCAGCAGATGGACGGAGCCGGTGAACAGCGTCCAGCACAGCACAGGACGAGCATCAGACTCGATACCACTGAGAGGAGCAAACAGAAACACAGAGGACTCGCTCAGCAGCCGCAGAACTGAGTTCCTCCACAGTCTGCGTTTATATCGCACTTTTTACGGCGCTCTGGCTGATCAGCTGTGCATCAGTGAACTGGCCTCTGCAGACGGACGGGCCTGCTGGAACGGAGACGACGTGGCCAGAAGCTATACTCTGCGAGTGGTTGGCAATGGGATTAAAGCGCAGGCTGAAAACCCAGAAGTCAAAGTGAAGGAGGCCGATCCGGTGATCAATCAAGTCATTGATAAACTCAAGCACATCAATCAGCTGCTGCAGGGCAGGTCGATCCCAAAACTGGGCTCTCTGGACCAGATCGAGACGGGCAGCGGAGACGGAAACAGCGGAGACTGTGATGATGAGGACGGATGCTGGGGATCAGGGAATGGAGCAGTCCAGAGGAGAGGGACAGTCACTAAATTGTTTGGCAGCGAATCCAGACGCTCGCTATGGAAAAACAAAAGGCGTCAGCGAGGCGTATCGGCAGGGAGTCGCATTGATCTCCAGTAA

Function

symbol description
gpc5a Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in collagen-containing extracellular matrix and membrane. Predicted to be anchored component of plasma membrane. Predicted to be active in cell surface. Is expressed in several structures, including anal fin; blastomere; central nervous system; cloaca; and ventral fin fold. Orthologous to human GPC5 (glypican 5).

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0016477 cell migration biological_process
GO:0009966 regulation of signal transduction biological_process
GO:1905475 regulation of protein localization to membrane biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-260 Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in collagen-containing extracellular matrix and membrane. Predicted to be anchored component of plasma membrane. Predicted to be active in cell surface. Is expressed in several structures, including anal fin; blastomere; central nervous system; cloaca; and ventral fin fold. Orthologous to human GPC5 (glypican 5).

Ensembl:

ensembl_id ENSDARG00000103647

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001512 True 1635 mRNA 0.55 8 3100244 3295045

Neighbor

gene id symbol gene type direction distance location
XLOC_000950 CU986306.1 coding downstream 385969 2704604 ~ 2714275 (-)
XLOC_000949 NA coding downstream 597500 2495021 ~ 2502744 (-)
XLOC_000948 ggact.1 coding downstream 642698 2454094 ~ 2457546 (-)
XLOC_000947 ggact.3 coding downstream 647059 2446996 ~ 2453185 (-)
XLOC_000946 si:ch211-235f1.3 coding downstream 765990 2331637 ~ 2334254 (-)
XLOC_000952 NA coding upstream 1562 3296607 ~ 3299853 (-)
XLOC_000953 CABZ01113467.1 coding upstream 10504 3305549 ~ 3330435 (-)
XLOC_000954 NA coding upstream 549791 3844836 ~ 3846864 (-)
XLOC_000955 NA coding upstream 734724 4029769 ~ 4074148 (-)
XLOC_000956 NA coding upstream 789133 4084178 ~ 4250442 (-)
XLOC_000945 NA non-coding downstream 849208 2239211 ~ 2251036 (-)
XLOC_000944 NA non-coding downstream 998983 2093996 ~ 2101261 (-)
XLOC_000940 NA non-coding downstream 1094709 2000666 ~ 2005535 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_01003547_01034507 NA coding CI01000299 null 1003319 ~ 1034812 (-)