XLOC_009512 (wdfy1)


Basic Information

Item Value
gene id XLOC_009512
gene name wdfy1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43208593 ~ 43238220 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018671
TGGAGGAATGCCGTGAAATGTAGTGAAATAAGAGTATGATTTTTTCtataataatttacttgagtaaaagtacacatatttaaatgtactcaaaaagtacacagtacccaataattttacttaagtaaatgtaaCGAAGTAAATGTAACTCGTTACTACCAACCTCTGTTCAAAAGTAACGTGGCTATGTATTTCTTTAAAAGTAACGCAGCAAGTTAGTTTTTAGAAGTAACTCAATATACATTCATTTCAAAAGTAGCTTTTCCCAAAACTGTAGTATGTtccatgtgttttatttgttcctCCATGTTTGTCCTTTGAAGAGctgttgtattaccatagcaattacaaaattaccacaacagattaatccaAATAACGTTACTTTACGGTtcaaaaacattaatattgttttctcTATGCGTTATTGTTTTCCTGGGCGCGTTTTGTCGGAGTGTTACGGTATCTGCTGTTGTGGTTGAAGTTCTCCGGCGCTCAGCTGACTCGAGTTGGGGAATCATCATCGTTATTATCGCGCATAGGGAAGCAGGAGAGGCGGCCATGGCGGCGGAGATCCACTCGAGGCCCCAAAGCTCCAGACCGGTCCTGCTGAACAAGATTGAGGGCCACAGCGACGGCGTTAACGCGGCGGTGCTCATCCCGAAGGAAGACGGAGTAATCACGGTCAGCGAAGACAGGACGATTCGGGTTTGGCTGAAGCGAGACAGTGGACAGTACTGGCCCAGCATTTACCACACTGTGTCCTcGCCCTGCTCCTGTGTATCGTATCATCATGAGAGCCGGCGGATCTTCATCGGTCAGGATAATGGAGCCGTTGTGGAGTTCCTCATCTCAGAAGACTTGAACAAAATGAACCATGTTAAAACATACCCAGCTCATCAGAACCGCGTGTCAGATCTCCTGTTCTCTCTGGAGAGTCAGTGGCTGGTCAGCACGGGTCATGATAAGAGCATCAGCTGGATGAGCACTCAGAGCGGCTCTATGCTGGGACGCCACAGCTTCGGCTCCTGGGCTTCCTGTTTACAATATGATAATGATACTCAGCATGCCTTTGTGGGAGATTATTCAGGTCAGATCACTCTACTGAAACTGGATGAACACTCGTGTTCCGTCATCACCACGCTAAAGGGACACGAAGgtAGTGTTGGAGCGTTATACTGGGATCCGGTTCACAGGTGGCTGTTTTCCGGAGCGTCTGATCACAGTGTGATCATGTGGGATATCGGCGGCAGACAGGGACGCACATTACTACTGCAGGGACACCATGAGAAGGTCCAGGCGTTGCGGTATCTGCCTCTGACCCGTCAGCTCGTGTCCTGTTCTGCTGATGGAGGAATAACCGTCTGGAACATGGACACAACAAGACAAGAGGCTCCTCAGTGGCTGGATAGCGATTCCTGTCAGAAATGTGAGCAGCCGTTTTTCTGGAATATAAAGCAGATGTGGGACACAAAGACTTTGGGGCTCCGACAGCATCACTGCAGGAAGTGTGGGAAGGCGATTTGTGGGAAATGTAGTTCCAAGCGCTCCACGTACCCCATCATGGGCTTTGAGTTCCAGGTGCGCATGTGTGACGACTGCTTCAACACCATCAAAGAGGACGATCGGACTCCACTGGCCACGTTTCATGAGGGGAAACACAGCATCGCTCACATGGATATGGACCCCAACCGAGGACTGATGGTCACGTGTGGCAGCGATCGAGTGGTCAAGATCTGGGACATGACGCAGGTGGTGGGCAGCAGTGTAGCAGCAGGATTCTCTCACCGCTGA
>TCONS_00018672
ATTATCGCGCATAGGGAAGCAGGAGAGGCGGCCATGGCGGCGGAGATCCACTCGAGGCCCCAAAGCTCCAGACCGGTCCTGCTGAACAAGATTGAGGGCCACAGCGACGGCGTTAACGCGGCGGTGCTCATCCCGAAGGAAGACGGAGTAATCACGGTCAGCGAAGACAGGACGATTCGGGTTTGGCTGAAGCGAGACAGTGGACAGTACTGGCCCAGCATTTACCACACTGTGTCCT

Function

symbol description
wdfy1 Predicted to enable metal ion binding activity. Predicted to be located in early endosome. Orthologous to human WDFY1 (WD repeat and FYVE domain containing 1).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041024-4 Predicted to enable metal ion binding activity. Predicted to be located in early endosome. Orthologous to human WDFY1 (WD repeat and FYVE domain containing 1).

Ensembl:

ensembl_id ENSDARG00000005425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018671 False 1794 mRNA 0.48 12 43208593 43238220
TCONS_00018672 True 238 mRNA 0.59 2 43226293 43237692

Neighbor

gene id symbol gene type direction distance location
XLOC_009511 NA coding downstream 21050 43173142 ~ 43187543 (-)
XLOC_009510 ap1s3a coding downstream 44002 43154744 ~ 43164591 (-)
XLOC_009509 BX890602.1 coding downstream 89402 43073923 ~ 43119191 (-)
XLOC_009508 si:ch211-181d7.3 coding downstream 448483 42741272 ~ 42760110 (-)
XLOC_009506 si:ch211-181d7.1 coding downstream 472160 42723126 ~ 42736433 (-)
XLOC_009513 serpine2 coding upstream 3695 43241915 ~ 43284021 (-)
XLOC_009514 prss16 coding upstream 48565 43286785 ~ 43327911 (-)
XLOC_009515 NA coding upstream 272330 43510550 ~ 43512072 (-)
XLOC_009516 ctsc coding upstream 365812 43604032 ~ 43625549 (-)
XLOC_009517 NA coding upstream 405624 43643844 ~ 43650523 (-)
XLOC_009507 CR457441.1 non-coding downstream 480007 42728470 ~ 42728586 (-)
XLOC_009504 NA non-coding downstream 650596 42551423 ~ 42557997 (-)
XLOC_009503 FP340266.1 non-coding downstream 679689 42528790 ~ 42528904 (-)
XLOC_009518 CABZ01044962.1 non-coding upstream 413426 43651646 ~ 43651761 (-)
XLOC_009523 NA non-coding upstream 761310 43999530 ~ 44020074 (-)
XLOC_009524 NA non-coding upstream 779213 44017433 ~ 44017563 (-)

Expression


Co-expression Network