XLOC_000952


Basic Information

Item Value
gene id XLOC_000952
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3296607 ~ 3299853 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003306
CACATGGTTCAAGGCAGGTCGCCTTCGCGCCACTTTTGCAATTTTACTATGATTAAGAAAGTCGTTTCAGGAGAAGTTTCACTTTGCGTCGGATGCGCGCCGCGTGTGTTACATACGACCGCGCTCCACTTTTAAGTTTACGCACCAGTTTCGCAGATTTGTCCAGAGCAGTGGCTGTAAACGGCAAGTGAGTGAAGATGGTGGATTTCACTGAATTCCCAGGAAAGATGGGAGTAGTTGCACGCAAGTTGGACTTTCTTGAGTGGACTTGGTTGGTGTCAATGTATTGTCAAAGTGCTTACAGTGCAGGTAGTATTATGGAATATCTACTGCAGTGGAGGCACTTCTAGCAATACACTTGACCATTTTAACCTTCCTCCAGGCATCCTTCGGCAAGACACCCAACCTAACGGCTTTGTGCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGACTAGCACCTACTGCCCTAAGTGCTCCTTCTGGCACGAGGGTCTGTGACTTGCATCCATAtatatttgtgtctgtgtgtgtttatgtaatttTTCCCCTCATTTTTTCTTTTGGTGCAGTTCTCTGCTAGTTTTGCATAGTTGCACTACAAGAAAACGGGAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGCTGCTTCTCCACGATTCCCATGTTTTGATTTTGTAAAATCAAAGTTTCTCGATTAATCGCCGTCCCCCCCAGCCCCTTCATATTTTTCTCTCCCCTTCTTAAATAAATCTCCTAATGTTGCAGTTGTGTTAGAGTTTCAGCAGTGCTAAAGTGCTTATAGTGCAGGTAGTATTTCTGTCATCTACTGCAGTGTGAGCACTTGAAGTACTTCTAGCTTAATGCGTCTGGGATCCGAAGATTTCTGCTAGAAATCCTGAGGTCTGCGTGCGCTATTTGACCTTGCTGGACCCCCGGTCAGTTTTGCTGGTTTGCATTCAGCTTTTAAGACTGTGCGCTGTGCAAATCCATGCAAAACTGATTGTGGCAGCACACTTCTTAAGCACTTGTTTTTGGAGTCGTTTGGTCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGTGGAGATTGTACcccacaaatatttttattttccatttcatTTGCCATTCgttatttttcattattcatttaagcattttttttttttttgagaattacTTTTATAAACACCTTGATACTGTGATTTGAATGAATGCAAAAGCTTGTCAATAAAATATTGCGATGCATCAtctttgtttcatttattatctTAACACTGTAATTTTTACACCATGCAAGGCATGATTAACATTTAGACACTTGTTTGCTATGCTGTTAAGTGTGTTAATGACTTGGGTTTTATTAAACCAACATAATCGGACAAATCAACATAGTCTATCAGCTGCTCTTCAGATTTATCAAATCCAATTATAAAAATGCAGAGTAAGCCGAGTAATCTAGCATCCCTTTAAGTACACATGCTTAATGCAGAGGGGTGGTCTTAATCCCTATATTGTAGTGTGTATAAATGGTACTTGTACAAGTAAAGCTTTTAAAATTATGTTGATTAGGAAAgtggtttaaaaaatgtacaatatCTTGAATTCTGTGTTCACTGCTGAAGTTTTGTCTAATGGTTGACTACCATGGTGTTCAGCTGCTGTGCATTGGAATGTTGGGAGGTTTGCTGTAGCCCTGTGTAAAGATGAACAGTACATTCATTTTTATAGTGAAAGCATGTTctctaagtttaaaataaatttgttgttAGTCCATAGGGAAGTACAGCCAATCTCTATTCAAATCAAAACCTTTGAGTCttatcactttattattattat
>TCONS_00001513
TGGTCCCTTTCTGCGCAGGTTGGGATTGGTAGCAATGCTGTGTGTTTTGAAGGTATTGCACTTGTCCCGGCCTGTAAAGGATTGT
>TCONS_00001514
GCTGGACCCCCGGTCAGTTTTGCTGGTTTGCATTCAGCTTTTAAGACTGTGCGCTGTGCAAATCCATGCAAAACTGATTGTGGCAGC
>TCONS_00001515
TCTTAAATAAATCTCCTAATGTTGCAGTTGTGTTAGAGTTTCAGCAGTGCTAAAGTGCTTATAGTGCAGGTAGTATTTCTGTCATCTACTGCAGTGTGAGCACTTGAAGTACTTCTAGCTTAATGCGTCTGGGATCCGAAGATTTCTGCTAGA
>TCONS_00001516
TGGTGCAGTTCTCTGCTAGTTTTGCATAGTTGCACTACAAGAAAACGGGAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGCTGC
>TCONS_00001517
GGCTTTGTGCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGACTAGCACCTACTGCCCTAAGTGCTCCTTCTGGCACGAGGGT
>TCONS_00001518
GGACTTTCTTGAGTGGACTTGGTTGGTGTCAATGTATTGTCAAAGTGCTTACAGTGCAGGTAGTATTATGGAATATCTACTGCAGTGGAGGCACTTCTAGCAATACACTTGACCATTTTAACCTTCCTCCAGGCATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000098078 ENSDARG00000099103 ENSDARG00000100273 ENSDARG00000104155 ENSDARG00000104805 ENSDARG00000104910

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003306 False 1893 lncRNA 0.40 2 3296607 3299853
TCONS_00001513 False 85 miRNA 0.49 1 3297367 3297451
TCONS_00001514 False 87 miRNA 0.51 1 3297484 3297570
TCONS_00001515 False 153 miRNA 0.40 1 3297603 3297755
TCONS_00001516 False 89 miRNA 0.46 1 3297848 3297936
TCONS_00001517 False 83 miRNA 0.52 1 3298006 3298088
TCONS_00001518 True 138 miRNA 0.43 1 3298112 3298249

Neighbor

gene id symbol gene type direction distance location
XLOC_000951 gpc5a coding downstream 1562 3100244 ~ 3295045 (-)
XLOC_000950 CU986306.1 coding downstream 582332 2704604 ~ 2714275 (-)
XLOC_000949 NA coding downstream 793863 2495021 ~ 2502744 (-)
XLOC_000948 ggact.1 coding downstream 839061 2454094 ~ 2457546 (-)
XLOC_000947 ggact.3 coding downstream 843422 2446996 ~ 2453185 (-)
XLOC_000953 CABZ01113467.1 coding upstream 5696 3305549 ~ 3330435 (-)
XLOC_000954 NA coding upstream 544983 3844836 ~ 3846864 (-)
XLOC_000955 NA coding upstream 729916 4029769 ~ 4074148 (-)
XLOC_000956 NA coding upstream 784325 4084178 ~ 4250442 (-)
XLOC_000957 FP009765.2 coding upstream 910645 4210498 ~ 4210652 (-)
XLOC_000945 NA non-coding downstream 1045571 2239211 ~ 2251036 (-)
XLOC_000944 NA non-coding downstream 1195346 2093996 ~ 2101261 (-)
XLOC_000940 NA non-coding downstream 1291072 2000666 ~ 2005535 (-)

Expression


Co-expression Network