XLOC_009522 (nlrc3l)


Basic Information

Item Value
gene id XLOC_009522
gene name nlrc3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43982088 ~ 43995053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018682
GACGTCATCATCAATGACCTGACAGGAAATGCGGAAGTCCTTGTTTCCGACGGTCCCGAAAGCCGTGGATGTTTAAACTCTTTTTGAAAGCAAAATATCGACAGAATTGACTATTAATCGAGTCAATTTAACGCTCAATCGCTCACTAAATGTCTTGGATGCTGTTCTGTGATCTGTGTGTAAGCACTTTATAAAGATCATCATGAGTCTTGTTGCTGAAGATAGTGATTCTGATGTGGATCGGAATAGGATGGACCGGCCACCTAGCAGTTATGGCTCCATGCACAGCGATGATCAAGATGAGGAGCTGGACTACATTGAAGACTCTGAACCACCACCTGCAAGGGTCAGGCTTCAGCGGCCCGATTCACCAGAGACTGCCATTactgaacgcacacacacacaccagtccaGCATACACCACAGTGGTGGAGTTTACCTCACACGACAGTCCATTACGCAAGAAGAATTCCGCTCTCCTGCCCCTCCTACCAGAGAGCCCACGATCCTGGATCAATCTGAGCTGCAGAGCGAAATTCGGACAGAAGCAGAGATGGATGAAGAACCGAATGACAGAGAGATGGATTTTCAGGATCAACAGAACGAAGGCTCTGCAATGGAGGTGCAGGAGGAGCAGGCGGAGGCTACAACAGTTGAAGATTTTGATGAAATTGTTGAGTACTCTGATGAACAGAGGGATCCTCCTCCTCGTCCACCAGAGGGCGCGGGTCTGCACTTTCAACATACACACACCGCCTTCACCCTGCGCCATGTGCTGATGGCCATGGTGAGAAGTCTCTCTCAGCTTCACCCGTCAGATATGGGCTATTATAAGCGCAGTCTGAGCACTCACTGCAGATTCAAGAAGAACTACGCCACGATCAAGGATCTGCAGGACCCGCTGGATGTGGCCGATAAGATGATCGAGATCTGCGGACAGGGGGAAGCTCTGTATCTCACTGTACGAAACCTCCAGAGCATCGGCAGAGACGATCTGGCTGTAATCCTGAGAAAGACCTGTAGAAGAGtCTTACTACAACATGACCTGAAAATTGCCCACGACAGACGCTATTACTCTCTTTATGAAGGCCGCTGTCGTCCGGGTCAGCAGCGCTACATTAGCGACGTCTACGTTGAACCGGTAACCGTAATCCGAGGCCGAAGAGATGTCGTAAACCCTGAGAACGAGGTCCGAAAGATACCGTACACAATCGAGGAGACCGCAATCAGACCCGCCGACATCTTCTGCCCCCTCCCTCAAGACCAAAAACCAGTCCGTACCGTCATAATGACAGGAGTCCCCGCCTGCGGTCTAACGGTGGCAATCAGCAAGTTCATTATCGATTGGATGGAGGAAAAAACCAATCGAGACTTTCAATTCATCTTCCCGCTGCCTGCAAAAGATCTGAACTTCGGAAAGGATAAAGATCGGAGCTTCCTAGAGGTTATCTCCTACTTTTACGGAGAAGCCGAAAACATTAAATTCCTTGAGAAGGAAGACTGTTTGTGTCTCTTCATTATCGACTCTTTAGAGATGTGTCAGCATCCGCTGGACttcaaaaataacaaaactatAACAAGCGCTAGAGAGCCAGCAAAGTTTGACGTTCTTCTCACCAACTTAATCAAAGGCACGTTGCTTCCTCATTGCAAAGTTTGGATTACTAGCCATGTCACTGACACCTATCGAATCCCTTCAAATTTAGTCGACAGGTATGTTGAGTTACGAGGATGGACCGATGATAAAAAGGAAGAGTTCTTCACTAAGAGGACCCCCGAGCCGGAACTCGGGCGAAAAGTTTACAACCACATGAAACGCTCCAAAGCCCTGGAGATCATCTGCCATCTTCCTCTGTTCAGCTGGATGGTGGCGTATATCTACGAACGAGCATTTCGGGATCCTGAATTTGGCAAACATCCACCTGGGATTACGGCGTTTTATTCACAGTACATCGTGGTTCAGATGAACCGCTCGTTCGAGAAATATCGCGGATGCAACGTGGATGCGCAAAAGTGGACTGACTTTGACAAGAACTTCACGGAGCTGATGGGAAAGATGGCGTATCGGATGATTCAAGAAGCACGGGATTATTTTACGGTGGACGATTTGCAAGCTGTTGGTCTGAAATACGATGATTTGAAATGTCGAGATGGATTGACCACTGAGGTCAAGCGAGAAAGTGCCGACGTCAGAACGTGGGTTTTCAAGTTTGTCCACGTCACCGTCCAGGAGTACATCGCTGCTATGTATGTATACGTGGCGTACAGGAAAAACGGGAAGAATGTGATCGAACCGAACAAGATGACGTCTTGGTTGCCGGGTTCAAATAAGGATCGTTCTGTCATCGACTTGTACCGTCCTGCGATCGACCGTGCGCTGGCTTCCCCAAATGGACAGTGGGACATGTTTCTGCGCTTCCTGATTGGATTGGTGACTCCGGGAACCGAGGAGAACCTGCATGGATACCAGCTCAATCACTACCATCCCAAAGCCAAAGGCACGGAGGATGTTGTCAAATACATCAAGAAGAAGATGAAAGACAGCCTGAACCCGGACCGCTACAAAAACCTGGAGCTGTGTCTGGTGGAGCTGGAGGAAGGCAAAGAGGAGGTCAGGAGATGA
>TCONS_00018683
CAACTATCGAAACCGAAACCAAGGTGACGTCATCATCAATGACCTGACAGGAAATGCGGAAGTCCTTGTTTCCGACGGTCCCGAAAGCCGTGGATGTTTAAACTCTTTTTGAAAGCAAAATATCGACAGAATTGACTATTAATCGAGTCAATTTAACGCTCAATCGCTCACTAAATGTCTTGGGTAAGTTTTGTCGCCTTTTTTAATCTTACGTTATTGAAACTGCTTGAAAAATATGTCGAGTTTCCTTTGGGGTTGTGAAAGATAACGTTAATTTACACATTGTGTTGTTTCTGGAGCAGATGCTGTTCTGTGATCTGTGTGTAAGCACTTTATAAAGATCATCATGAGTCTTGTTGCTGAAGATAGTGATTCTGATGTGGATCGGAATAGGATGGACCGGCCACCTAGCAGTTATGGCTCCATGCACAGCGATGATCAAGATGAGGAGCTGGACTACATTGAAGACTCTGAACCACCACCTGCAAGGGTCAGGCTTCAGCGGCCCGATTCACCAGAGACTGCCATTactgaacgcacacacacacaccagtccaGCATACACCACAGTGGTGGAGTTTACCTCACACGACAGTCCATTACGCAAGAAGAATTCCGCTCTCCTGCCCCTCCTACCAGAGAGCCCACGATCCTGGATCAATCTGAGCTGCAGAGCGAAATTCGGACAGAAGCAGAGATGGATGAAGAACCGAATGACAGAGAGATGGATTTTCAGGATCAACAGAACGAAGGCTCTGCAATGGAGGTGCAGGAGGAGCAGGCGGAGGCTACAACAGTTGAAGATTTTGATGAAATTGTTGAGTACTCTGATGAACAGAGGGATCCTCCTCCTCGTCCACCAGAGGGCGCGGGTCTGCACTTTCAACATACACACACCGCCTTCACCCTGCGCCATGTGCTGATGGCCATGGTGAGAAGTCTCTCTCAGCTTCACCCGTCAGATATGGGCTATTATAAGCGCAGTCTGAGCACTCACTGCAGATTCAAGAAGAACTACGCCACGATCAAGGATCTGCAGGACCCGCTGGATGTGGCCGATAAGATGATCGAGATCTGCGGACAGGGGGAAGCTCTGTATCTCACTGTACGAAACCTCCAGAGCATCGGCAGAGACGATCTGGCTGTAATCCTGAGAAAGACCTGTAGAAGAGtCTTACTACAACATGACCTGAAAATTGCCCACGACAGACGCTATTACTCTCTTTATGAAGGCCGCTGTCGTCCGGGTCAGCAGCGCTACATTAGCGACGTCTACGTTGAACCGGTAACCGTAATCCGAGGCCGAAGAGATGTCGTAAACCCTGAGAACGAGGTCCGAAAGATACCGTACACAATCGAGGAGACCGCAATCAGACCCGCCGACATCTTCTGCCCCCTCCCTCAAGACCAAAAACCAGTCCGTACCGTCATAATGACAGGAGTCCCCGCCTGCGGTCTAACGGTGGCAATCAGCAAGTTCATTATCGATTGGATGGAGGAAAAAACCAATCGAGACTTTCAATTCATCTTCCCGCTGCCTGCAAAAGATCTGAACTTCGGAAAGGATAAAGATCGGAGCTTCCTAGAGGTTATCTCCTACTTTTACGGAGAAGCCGAAAACATTAAATTCCTTGAGAAGGAAGACTGTTTGTGTCTCTTCATTATCGACTCTTTAGAGATGTGTCAGCATCCGCTGGACttcaaaaataacaaaactatAACAAGCGCTAGAGAGCCAGCAAAGTTTGACGTTCTTCTCACCAACTTAATCAAAGGCACGTTGCTTCCTCATTGCAAAGTTTGGATTACTAGCCATGTCACTGACACCTATCGAATCCCTTCAAATTTAGTCGACAGGTATGTTGAGTTACGAGGATGGACCGATGATAAAAAGGAAGAGTTCTTCACTAAGAGGACCCCCGAGCCGGAACTCGGGCGAAAAGTTTACAACCACATGAAACGCTCCAAAGCCCTGGAGATCATCTGCCATCTTCCTCTGTTCAGCTGGATGGTGGCGTATATCTACGAACGAGCATTTCGGGATCCTGAATTTGGCAAACATCCACCTGGGATTACGGCGTTTTATTCACAGTACATCGTGGTTCAGATGAACCGCTCGTTCGAGAAATATCGCGGATGCAACGTGGATGCGCAAAAGTGGACTGACTTTGACAAGAACTTCACGGAGCTGATGGGAAAGATGGCGTATCGGATGATTCAAGAAGCACGGGATTATTTTACGGTGGACGATTTGCAAGCTGTTGGTCTGAAATACGATGATTTGAAATGTCGAGATGGATTGACCACTGAGGTCAAGCGAGAAAGTGCCGACGTCAGAACGTGGGTTTTCAAGTTTGTCCACGTCACCGTCCAGGAGTACATCGCTGCTATGTATGTATACGTGGCGTACAGGAAAAACGGGAAGAATGTGATCGAACCGAACAAGATGACGTCTTGGTTGCCGGGTTCAAATAAGGATCGTTCTGTCATCGACTTGTACCGTCCTGCGATCGACCGTGCGCTGGCTTCCCCAAATGGACAGTGGGACATGTTTCTGCGCTTCCTGATTGGATTGGTGACTCCGGGAACCGAGGAGAACCTGCATGGATACCAGCTCAATCACTACCATCCCAAAGCCAAAGGCACGGAGGATGTTGTCAAATACATCAAGAAGAAGATGAAAGACAGCCTGAACCCGGACCGCTACAAAAACCTGGAGCTGTGTCTGGTGGAGCTGGAGGAAGGCAAAGAGGAGGTCAGGAGATGA

Function

symbol description
nlrc3l Acts upstream of or within microglia development and negative regulation of inflammatory response.

GO:

id name namespace
GO:0050728 negative regulation of inflammatory response biological_process
GO:0014005 microglia development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-346 Acts upstream of or within microglia development and negative regulation of inflammatory response.

Ensembl:

ensembl_id ENSDARG00000099936

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018682 False 2623 mRNA 0.49 7 43982088 43995028
TCONS_00018683 True 2767 mRNA 0.48 6 43982088 43995053

Neighbor

gene id symbol gene type direction distance location
XLOC_009521 chordc1a coding downstream 3947 43961814 ~ 43978141 (-)
XLOC_009520 CABZ01073033.2 coding downstream 109083 43824672 ~ 43873005 (-)
XLOC_009519 grm5b coding downstream 213312 43656241 ~ 43768776 (-)
XLOC_009518 CABZ01044962.1 coding downstream 330327 43651646 ~ 43651761 (-)
XLOC_009517 NA coding downstream 331565 43643844 ~ 43650523 (-)
XLOC_009523 NA coding upstream 4477 43999530 ~ 44020074 (-)
XLOC_009524 NA coding upstream 22380 44017433 ~ 44017563 (-)
XLOC_009525 numa1 coding upstream 25991 44021044 ~ 44052927 (-)
XLOC_009526 lamtor1 coding upstream 75253 44070306 ~ 44077937 (-)
XLOC_009527 CU655961.1 coding upstream 111588 44106641 ~ 44117290 (-)
XLOC_009515 NA non-coding downstream 470016 43510550 ~ 43512072 (-)
XLOC_009511 NA non-coding downstream 794545 43173142 ~ 43187543 (-)
XLOC_009509 BX890602.1 non-coding downstream 862897 43073923 ~ 43119191 (-)
XLOC_009528 NA non-coding upstream 124180 44119233 ~ 44123107 (-)
XLOC_009530 NA non-coding upstream 375514 44370567 ~ 44393774 (-)
XLOC_009536 CABZ01037147.1 non-coding upstream 755461 44750514 ~ 44750630 (-)

Expression


Co-expression Network