Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_009524

Basic Information

Item	Value
gene id	XLOC_009524
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	44017433 ~ 44017563 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018686
GTGGTTAGTCCCAGTGTGTGTCTGCAGATTGGAGTAGTGCTGCAGTCCTGGACACCACATAGAGTGATGCTGGTTTCTGCCGACAGGGCTTGTAGAGTCCTTGGGCTCCCTGTGCGATGGTTCCACACATT

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

Ensembl:

ensembl_id

ENSDARG00000105169

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00018686	True	131	scaRNA	0.54	1	44017433	44017563

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009522	nlrc3l	coding	downstream	22380	43982088 ~ 43995053 (-)
XLOC_009521	chordc1a	coding	downstream	39292	43961814 ~ 43978141 (-)
XLOC_009520	CABZ01073033.2	coding	downstream	144428	43824672 ~ 43873005 (-)
XLOC_009519	grm5b	coding	downstream	248657	43656241 ~ 43768776 (-)
XLOC_009518	CABZ01044962.1	coding	downstream	365672	43651646 ~ 43651761 (-)
XLOC_009525	numa1	coding	upstream	3481	44021044 ~ 44052927 (-)
XLOC_009526	lamtor1	coding	upstream	52743	44070306 ~ 44077937 (-)
XLOC_009527	CU655961.1	coding	upstream	89078	44106641 ~ 44117290 (-)
XLOC_009528	NA	coding	upstream	101670	44119233 ~ 44123107 (-)
XLOC_009529	CU929391.2	coding	upstream	220584	44238147 ~ 44275069 (-)
XLOC_009517	NA	non-coding	downstream	366910	43643844 ~ 43650523 (-)
XLOC_009515	NA	non-coding	downstream	505361	43510550 ~ 43512072 (-)
XLOC_009511	NA	non-coding	downstream	829890	43173142 ~ 43187543 (-)
XLOC_009509	BX890602.1	non-coding	downstream	898242	43073923 ~ 43119191 (-)
XLOC_009530	NA	non-coding	upstream	353004	44370567 ~ 44393774 (-)
XLOC_009536	CABZ01037147.1	non-coding	upstream	732951	44750514 ~ 44750630 (-)
XLOC_009538	NA	non-coding	upstream	1174121	45191684 ~ 45192115 (-)
XLOC_009539	NA	non-coding	upstream	1282964	45300527 ~ 45313039 (-)

Expression

Co-expression Network