XLOC_009551


Basic Information

Item Value
gene id XLOC_009551
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 46330491 ~ 46331099 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019263
CACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTGGTCCATAACCAGGTCCTTGAGGTGGTCCATATCCAGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019262
CACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019264
CTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTGGTGCAGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019267
CCTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019266
CCTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTGGTGCAGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019265
CCTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGAACTCCGGGTCCATATCCAGGTCCTTGAGGCACTCCAGATGCTGGTCCATATCCGGGTCCTTGAGGCGCTACGGGTCCTGGTCCATACGCGGGTCCTTGAGGCACACCAGGTGCAGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019269
ACCTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019268
ACCTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCGTATCCAGGTCCTTGAGGTTGTCCATATCCAGGTCCCTGAGGTTGTCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTGGTCCATAACCAGGTCCTTGAGGTGGTCCATATCCAGGTCCTTGAGGAACTCCGGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC
>TCONS_00019270
caaatgtTTACCTCATCACTGCTCGATGACTTGCGTCTACGATGATGTCCACGTCCGTGTCCATGGCCATGATGGCGCTCCTGTCCGTGATGATGTCCAAATCCGCGTTGGTGTCCGTGTTCATATCCATATCCGGGTCCTTGAGGTTGTCCATATCCAGGTCCTTGAGGTGGTCCATATCCAGGTCCATATCCAGGTCCTTGAGGCAATACGGGTCCGGGTCCTTGAGGCACTACAGGTCCAGGTCCATATGCAGGTCCTTGACCC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019263 False 371 lncRNA 0.55 3 46330491 46331083
TCONS_00019262 False 281 lncRNA 0.55 3 46330491 46331083
TCONS_00019264 False 442 lncRNA 0.55 2 46330491 46331088
TCONS_00019267 False 341 lncRNA 0.55 3 46330491 46331089
TCONS_00019266 False 347 lncRNA 0.55 3 46330491 46331089
TCONS_00019265 False 359 lncRNA 0.57 2 46330491 46331089
TCONS_00019269 False 414 lncRNA 0.54 2 46330491 46331090
TCONS_00019268 False 420 lncRNA 0.55 3 46330491 46331090
TCONS_00019270 True 267 lncRNA 0.54 3 46330491 46331099

Neighbor

gene id symbol gene type direction distance location
XLOC_009550 NA coding downstream 36765 46290272 ~ 46293726 (-)
XLOC_009549 NA coding downstream 61573 46257545 ~ 46268918 (-)
XLOC_009548 NA coding downstream 116672 46210983 ~ 46213819 (-)
XLOC_009547 NA coding downstream 468770 45776193 ~ 45861721 (-)
XLOC_009546 CABZ01067232.1 coding downstream 656278 45668851 ~ 45674213 (-)
XLOC_009552 NA coding upstream 27151 46358250 ~ 46373939 (-)
XLOC_009553 NA coding upstream 41550 46372649 ~ 46378882 (-)
XLOC_009554 NA coding upstream 267700 46598799 ~ 46599661 (-)
XLOC_009555 CABZ01044053.1 coding upstream 302176 46633275 ~ 46673161 (-)
XLOC_009556 zgc:162872 coding upstream 354335 46685434 ~ 46718795 (-)
XLOC_009545 NA non-coding downstream 769635 45558167 ~ 45560856 (-)
XLOC_009559 CR381579.1 non-coding upstream 413343 46744442 ~ 46745262 (-)
XLOC_009561 NA non-coding upstream 508797 46839896 ~ 46848663 (-)

Expression


Co-expression Network