XLOC_009556 (zgc:162872)


Basic Information

Item Value
gene id XLOC_009556
gene name zgc:162872
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 46685434 ~ 46718795 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018708
AACACGAGCAAACACCTCAGCAGCTgtcaacacactcacacacacctcaAGACAACTGTAAACAATTTCTTACAGTAAACGAGTGTGTTGTAGCGGAGTGTGTGTCATTATTATCATCGTTATATTCAGCGTGTGTTTGTGAGGAGCGGAGGAGGATGAGAAATAACGgctcatgatgatgatgatgatgaggaagaGATGATGCTATTCAGGCCTgcaaattaaacacacacacacactaaaacacacgcattaacacacatacacactcagaaTGGACACTTTTTTGGACTTCGAGGACTGTATCAGAGACTCTCCTGCATTCAGgcagTCTCTGGATAAATGTGAGAGTGACATGTCTGAACTGGAGAGTCGTGTGGAGAAAgtgatGAAGTTGTGTGGTCAGATGGTGGACGCGGGTCAGAATTACACCTCCTGCAATCAGCTTTTCCTCTGCGCACTGAGCGAGTTCACCGCGTATCATAAGAGTGACGGTGTGATTCTGAACTGCCTGCGCCAGTTTAACCAGGGCCTGCAGGAGATGATCCAGTTTCAGacgatGCTGTTTGATCAGACACAGAGAGCCATCAGCCAACAGCTCACAAACCTGCTTTCACAGTTTGTCCCGCAGATTCGGGAAACGCGGCGTGAGTTTGTGCGGATCGGAGATGATCTTGATTCTGCGGTGGTGAAGAACGCTCAGGTCAGTCGACACAAACCTGTGGATGCAGAAAGAGCGACGCACCTGCTGCTCGCCACGCGCAAATGCTATCAACACTTCGCTCTGGATTACTGCCTGCAGCTGAATAATTTCAAGGTCCAACAGAAGCTGGATATTCTGAATTCGGTCTTCTCGTATTTTCACGCTCAGTACACATTTTTCCACCAGGGGTTTGACTTGCTGAGAGATCTGGAACCAACCATGAAGACGATGGCCtcacagCTCTCTCAGCTGTCCACTGACTGCTCTGCCAAGAGGAAAGATCTGGAAAACACACACCTGCTCGTCCAGCAGAGGGACGCATCTGGAGAAGCTGTAATTGTGTGTAATCCGTCTGACGGAGGAACTATTCAAGGCTACCTTTTCAAGCGCTCACGCAAGAAGAACAAGACATGGAAGAGGTGCTGGTTTTCCACTGAAAATAATCAGTTAATCTACCTAAAATCACACAAGgagCAGCCGGTGGTTCTCTTTGATGATCTGCGTCTGTGTGCAGTCAAATCTCTGGATGTGATTGATCGACGTTTCTGTTTCGAGCTTCTGTCGGTGCAGAAGTGTTGTGTGTTACAGGCTGACTCAGAGGAGCTGAAGTCAGCGTGGATGAATGCTGTTCAGGGATGTATAGACATGGCATATCGAGATCAAGTAACTGATCAAAACACTcagGTCAAGGAAAGCTCCGCCCCTGTGTCTATTCCAGACCCGCCCTCTCACCCACCCGCTCTGGGCGTGGCTCTGAGTGGCCGTGGTAACCAGCACTGCTGTGACTGTGGGGAAGCGGAGCCACGCTGGGCCAGTGTGAACCTCGGCATTACCATGTGCATCGAGTGTTCGGGCATCCACAGgAGTCTTGGCGTTCATCTGTCCAAAGTTCGTTCGCTCACTCTTGATTCCTGGGAGCCTGAACAGTTAAAGCTGCTGTGTGTTCTGGGTAATGAAGTTATTAATGGTATTTATGAGCGTGAGGCAGCAGACGGCCTGCAGAAGCCCAGCGCAGGCAGTCCTCGGCAGGATAAAGAACAGTGGATCAGGTCCAAGTATGTGGAGAAAAGGTTTGTGGCACGTCATCTTGATGGTCCTGATGCTGATGCATTGAAGCTGCGTGCCAGAAAGAGACTGTATTCGGCGTCAGTCAGCGGGGATCTGGTGGCAATGGCGGAGTCTCTGGCAGAGGGGGCGGAGATTAACTGGAATAATAATGAGCAGGAGGGACGGACAGCTCTGATTGGCTCAGCCATTGGCggctCTCTGCTGGCGTGTGAGTTTCTGTTGCAGAACGGTGCTAATGTGAACCACAGAGATCAGCGTGGACAGGGAGCTCTGCACGCCGCCGCCACATACGGACACACAGGGTAATACACCATGCTCTGCTTATCAGGAAAACTGATTCAGGTTATGCTTGTttgcaattaaaataattattgattccatcc
>TCONS_00018709
CGGATGATATCCGCCAACGGAAGTTTACCTCATATCAACACGAGCAAACACCTCAGCAGCTgtcaacacactcacacacacctcaAGACAACTGTAAACAATTTCTTACAGTAAACGAGTGTGTTGTAGCGGAGTGTGTGTCATTATTATCATCGTTATATTCAGCGTGTGTTTGTGAGGAGCGGAGGAGGATGAGAAATAACGgctcatgatgatgatgatgatgaggaagaGATGATGCTATTCAGGCCTgcaaattaaacacacacacacactaaaacacacgcattaacacacatacacactcagaaTGGACACTTTTTTGGACTTCGAGGACTGTATCAGAGACTCTCCTGCATTCAGgcagTCTCTGGATAAATGTGAGAGTGACATGTCTGAACTGGAGAGTCGTGTGGAGAAAgtgatGAAGTTGTGTGGTCAGATGGTGGACGCGGGTCAGAATTACACCTCCTGCAATCAGCTTTTCCTCTGCGCACTGAGCGAGTTCACCGCGTATCATAAGAGTGACGGTGTGATTCTGAACTGCCTGCGCCAGTTTAACCAGGGCCTGCAGGAGATGATCCAGTTTCAGacgatGCTGTTTGATCAGACACAGAGAGCCATCAGCCAACAGCTCACAAACCTGCTTTCACAGTTTGTCCCGCAGATTCGGGAAACGCGGCGTGAGTTTGTGCGGATCGGAGATGATCTTGATTCTGCGGTGGTGAAGAACGCTCAGGTCAGTCGACACAAACCTGTGGATGCAGAAAGAGCGACGCACCTGCTGCTCGCCACGCGCAAATGCTATCAACACTTCGCTCTGGATTACTGCCTGCAGCTGAATAATTTCAAGGTCCAACAGAAGCTGGATATTCTGAATTCGGTCTTCTCGTATTTTCACGCTCAGTACACATTTTTCCACCAGGGGTTTGACTTGCTGAGAGATCTGGAACCAACCATGAAGACGATGGCCtcacagCTCTCTCAGCTGTCCACTGACTGCTCTGCCAAGAGGAAAGATCTGGAAAACACACACCTGCTCGTCCAGCAGAGGGACGCATCTGGAGAAGCTGTAATTGTGTGTAATCCGTCTGACGGAGGAACTATTCAAGGCTACCTTTTCAAGCGCTCACGCAAGAAGAACAAGACATGGAAGAGGTGCTGGTTTTCCACTGAAAATAATCAGTTAATCTACCTAAAATCACACAAGgagCAGCCGGTGGTTCTCTTTGATGATCTGCGTCTGTGTGCAGTCAAATCTCTGGATGTGATTGATCGACGTTTCTGTTTCGAGCTTCTGTCGGTGCAGAAGTAAGATGaagaaataacacacacacattatcaaACACAACACTGCGAATTGTtggaatatttttctccattacATGCG

Function

symbol description
zgc:162872 Predicted to enable GTPase activator activity and metal ion binding activity.

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-1 Predicted to enable GTPase activator activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000012184

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018708 False 2154 mRNA 0.50 19 46685434 46718759
TCONS_00018709 True 1390 mRNA 0.47 12 46693544 46718795

Neighbor

gene id symbol gene type direction distance location
XLOC_009555 CABZ01044053.1 coding downstream 12273 46633275 ~ 46673161 (-)
XLOC_009554 NA coding downstream 85773 46598799 ~ 46599661 (-)
XLOC_009553 NA coding downstream 306552 46372649 ~ 46378882 (-)
XLOC_009552 NA coding downstream 311495 46358250 ~ 46373939 (-)
XLOC_009551 NA coding downstream 354335 46330491 ~ 46331099 (-)
XLOC_009557 ilkap coding upstream 3715 46722510 ~ 46736432 (-)
XLOC_009558 clcn2c coding upstream 17999 46736794 ~ 46779934 (-)
XLOC_009559 CR381579.1 coding upstream 25647 46744442 ~ 46745262 (-)
XLOC_009560 chrd coding upstream 71881 46790676 ~ 46828958 (-)
XLOC_009561 NA coding upstream 121101 46839896 ~ 46848663 (-)
XLOC_009550 NA non-coding downstream 391708 46290272 ~ 46293726 (-)
XLOC_009562 NA non-coding upstream 360060 47078855 ~ 47079410 (-)
XLOC_009563 NA non-coding upstream 373828 47092623 ~ 47094230 (-)
XLOC_009567 NA non-coding upstream 496341 47215136 ~ 47218470 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01034030_00000662_00001351 NA coding CI01034030 null 662 ~ 1351 (-)