XLOC_000956


Basic Information

Item Value
gene id XLOC_000956
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4084178 ~ 4250442 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003309
ATAATCGCCTGTTTTCTGTAGTCGTGAACGATGATTTACACCGTGATACACTGTTACCTCTATGAATTGTTACACCTTTAGATGGCACCACGGGACTACCTTTATAACCGATAGCAAGACTTTTATATTGAAAAGAGACGAAACACGGACTTAAGTTTTACTTCCAGCTACCAAGTGTCATTGAAACATCATGGGATACATTATAGAAAGATGATAACCGACAAATcgcaataaagaaaacaaaatgagGGGTTAAGGAGCTATCTGAGAAGATTAGTTTCTGGTTGTCATTTGAAGGATACCAGTGAATCTGCAGTCCGTGTTGGAATGGGAAGATCATACCACCAGCTTGGAACATTGAATGTAAAGGTTTTGGAAAGAGACCTATGGCCTCTCTGCGATGGTACCACAAGGCGATGCTCACTCACTGACCCGAGGCTCCTGGAGGGGGTGTAGACCTTCAGCAGCAGGTGGAGCGCGTACGTGACGACGGAAGGAACCAAAGCTGAGAAGATCTCCGAAGGCTGTTTATCAAACCCCAAAAAAGTTCAAGTCCACCCCGCAGTCAAAGCTTTCTATTCCGAGCCCGTCCTCAATCACAGCAAACAGCGCTTTACCGAAACAGCACTTAAACAAAGCCTCGTTTCTGAGCCCTCTGATGGGGTGTTGATAACCAGGCCAGTGCCACCACATGACGCGCA
>TCONS_00003310
ATAATCGCCTGTTTTCTGTAGTCGTGAACGATGATTTACACCGTGATACACTGTTACCTCTATGAATTGTTACACCTTTAGATGGCACCACGGGACTACCTTTATAACCGATAGCAAGACTTTTATATTGAAAAGAGACGAAACACGGACTTAAGTTTTACTTCCAGCTACCAAGTGTCATTGAAACATCATGGGATACATTATAGAAAGATGATAACCGACAAATcgcaataaagaaaacaaaatgagGGGTTAAGGAGCTATCTGAGAAGATTAGTTTCTGGTTGTCATTTGAAGGATACCAGTGAATCTGCAGTCCGTGTTGGAATGGGAAGATCATACCACCAGCTTGGAACATTGAATGTAAAGGTTTTGGAAAGAGACCTATGGCCTCTCTGCGATGGTACCACAAGGCGATGCTCACTCACTGACCCGAGGCTCCTGGAGGGGGTGTAGACCTTCAGCAGCAGGTGGAGgttTCCCAAAAATTTACCAAGAGACTACCTCTGTAATGGCTGCATGAGTCACCATTGGAGCAGGTGAAATATGCGCAGCTGGAAGAGCACGTCAAATTAATTCTATATTACTAAACCATATAACTTTAACTCAATTAACTGTATAGCATCATGATCATTAATTCCGAACCCTAACCCTAAAGTTGTTGTCTATTTTATTAGCTTTTTGCAAAAGCAGCTCATCATCTTCAGGCGATATACAAccctttgctttgctttgcatCATGCTAAACAGCACCCGAGAACTGAGGTAATGAAGACTAAAGTCAGAATAATAATCCAGCAAGCGGAAGTctccatttagcctcaacattaTGATGAAATACTTGAGCACCAAGAGGAAATATCACCACTGTACTGGTCACAATCATCACACACCTCAAATAAACCAGTAATCGTCCCATTTCTGAGGATATCCTGACCCGCCATCAGGGGAGGATGATGACTTTTGGCAGATCGCGACACGGTTCACCAGAGCACCATTTCAAACGCCATGCCATGAGACACTAAAATGACCTTTCCAACAGGAGTCTCATATCTTGCTTATATCTGTGGCTTATCAACAGCAGCTGATGCTCATTTCAAGCTGTAGATGTGGAAATTTACCGCTGCTTGCTTCATCATCCACATTGGCCGTCAGTGGCCAGCAAAATAAAGCAGCGCGTAGGCAACTTTAAGGGAGCCGCGGACTTGACATCCAAATGAATCTGCAAGAGGACATGAATTGTGACACTGACTGTCCATTCGCTTTTTAGACGGGATATAGTTAGACTCGCATGAGGGACGCCACGAATGGAgcacacactcgcatatacatacagtacatatcaaGCAGTGTATTCCAGTGCAGCCACGCCACAAATTTGACTGTTCCACATGACTGAGCGCTCTAATAGTCAGCCGTTCACTCCGACACATGAGTGCTAAAACCTTGTAATTTCCACTTTGCATGTTGGAACATTTCTCTCAGTCTTTTCAGATTATTTCTCTGCTCGTCACATTCTAGGGAGCGTAATGGAGGAAGCTTTTATGAAAAGTCAATGGGAGAAACGCTTAGAGGAGGTGTTGATTCAATAGTAACGTTACAAATCTgcgactacatttacatggacatcactaatcgaattatttgccttaatctgaattagACAATACTATGATTAAGGTGTTCGCATGAGTTTCTTTTTGATGTTCCTGTTATGATCTTGTTTTACATTGTATA
>TCONS_00003311
ATAATCGCCTGTTTTCTGTAGTCGTGAACGATGATTTACACCGTGATACACTGTTACCTCTATGAATTGTTACACCTTTAGATGGCACCACGGGACTACCTTTATAACCGATAGCAAGACTTTTATATTGAAAAGAGACGAAACACGGACTTAAGTTTTACTTCCAGCTACCAAGTGTCATTGAAACATCATGGGATACATTATAGAAAGATGATAACCGACAAATcgcaataaagaaaacaaaatgagGGGTTAAGGAGCTATCTGAGAAGATTAGTTTCTGGTTGTCATTTGAAGGATACCAGTGAATCTGCAGTCCGTGTTGGAATGGGAAGATCATACCACCAGCTTGGAACATTGAATGTAAAGGTTTTGGAAAGAGACCTATGGCCTCTCTGCGATGGTACCACAAGGCGATGCTCACTCACTGACCCGAGGCTCCTGGAGGGGGTGTAGACCTTCAGCAGCAGGTGGAGTCTTGATTATGCAAACACATCACGCGCTGGATTTCTCTGGAGCTCTGGATTGGAGCCAGTGTTTACCGCTGCTTTGGTTCCACCACATCCTGCATGAGACCTGAGCACTACcattaaagggaacctattatgcaaaaatcacttttataagtggttgtgtggcagcagtgtgcaAATATAG
>TCONS_00001522
ATAATCGCCTGTTTTCTGTAGTCGTGAACGATGATTTACACCGTGATACACTGTTACCTCTATGAATTGTTACACCTTTAGATGGCACCACGGGACTACCTTTATAACCGATAGCAAGACTTTTATATTGAAAAGAGACGAAACACGGACTTAAGTTTTACTTCCAGCTACCAAGTGTCATTGAAACATCATGGGATACATTATAGAAAGATGATAACCGACAAATcgcaataaagaaaacaaaatgagGGGTTAAGGAGCTATCTGAGAAGATTAGTTTCTGGTTGTCATTTGAAGGATACCAGTGAATCTGCAGTCCGTGTTGGAATGGGAAGATCATACCACCAGCTTGGAACATTGAATGTAAAGGTTTTGGAAAGAGACCTATGGCCTCTCTGCGATGGTACCACAAGGCGATGCTCACTCACTGACCCGAGGCTCCTGGAGGGGGTGTAGACCTTCAGCAGCAGGTGGAGGTAAGAGGGTGCAGTGGTTGTCCTGTAAGCAAGCATCAATGATTTGAACTTGATCCAAGCTACGACCATTGAACATGAACTTttaaaggcatctttggatatctttcatTGCTATATAAgcatttttcagatgtttgctgaattgtGAATgttattaaaaccttgacttttacaaaTTGCGCTAAACataccggttatcgtcccatgcatAATTTCTACGCATTTTATAAATCAGAGCACCGATCATCGGTCATCATCCAAGAAGagttaaactgctgtgtttggcCAGTGGTGGTCAGTGTCCAGTCTCCTCAGGACAATTGTGCTTGAGTTTGACCGATGATCACCAGCATGATGTCCTGTCACAGTCAGACGGCAGCTTGTCAATGATGGCTAAAAATGTGACAGGAAGAACTTAATATGTGCCCATGGCAAGATGCACAAGGCTTAGAGACAAACCGCAAtgccaaacaaaagaaaaaaaaaacacagggcaaatacattacatacataatgGCAGTGTTTGTCGTGATTTAGGTCAGAAAGgggagaaaaatatataaatgaaaacgGAGCTTTTGGGTTGAGGAGAAACCCCCATCGGTCTAACCGTAGGAATGAAACATCACTAAGATTTATTTAGTATCTCGGGTTGCTTCTGGTTTGAAAACTCCTCCAGTGTTTGTTCATCACGCTTTTGTTACTAGGGTGGTCTGGGTGGGTTGCTAATACATTACTACACTGTGGAAAATGTCTGTAAAATTGTCTAAATTTTGTGATACatgatttatttttccccccgtttatttatgcttttgaattgaattatgggaccttcatctttcttcaaacaacttttaaccttgaaaagtaaaaaacaaacaagctgatgtttattaaaattttaatagtaGTGTTTACAAAATTATGCATTCAGACATTGTCTAAACGTCCACACGTTATTGTTGCtgatgaaatataacacacaaaatgtgatttaaatatttttcagttgCCTAGATATTAATTAgcagtcattcaaacatctttaccaaaggttctctacttgacggttggtctcgaGCATCTGCCATTTTTGTAGTTTTACACCTTTTTTTTTACCCACATTTGTAGTTCTAATGAAATTCACATCCAACCCGCTATATATTGTGGTCAATGTTAGCAGTACAAATGGTTCTACACTTCGAATTTCTACCAAAATGGTTGACCATCCGGGAATCATTGACATAGGCTACTACAATTAATTTCAAATTTACTACACAATCATTGCTTCTACATCGTTaatgtgtatgaatgaatgaaatttggatgtactacatctgccatttgtcattatcatgtgacctacctgtgtcagtgGCGTCAATTCACTCGCATTCATGAATTCTTTCACATTGCTTCATCGAATGCGCACTACAGAATCTCGCCGAAAGTAGTAGGTCACCTacgtacttcttgcatactgttttcctagcatactatatagtatagaagtatgcaCTTTCAGATGCAGCAATACTTTTTCGACGTATTACAGTTTGTGacatactatttttattttccagTACTATTTAGGACCAATAGCATGTGAATTGTGACGCACTACTGGTATTATTTTGGTTGCTAGATATCATTTTCatttgtattgtgatgcagttcccaGAGAAaggaataataaataagaaagcagtgggcgtggcttgtttttctactgcgagctgattggaaaTAGTAAAGTAGGCacttcattcagaaagatcgggaaaAAGGTTtggaagagttattacaacctaacagacacctcctgcccatcatttctgtttgttgtcaaaactgatagttggaggggcgtggttaagtatgttagccatgccCAAATACCTCATACATAAATaatctgacctttttttttttatgacacgcACAGATGAACTCATAGTTAGTGAAAATcaaaactaagggtgctttcac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003309 False 701 lncRNA 0.46 3 4084178 4250442
TCONS_00003310 False 1737 lncRNA 0.42 3 4182970 4250442
TCONS_00003311 False 657 lncRNA 0.44 3 4208516 4250442
TCONS_00001522 True 2468 lncRNA 0.38 2 4235403 4250442

Neighbor

gene id symbol gene type direction distance location
XLOC_000955 NA coding downstream 10030 4029769 ~ 4074148 (-)
XLOC_000954 NA coding downstream 237314 3844836 ~ 3846864 (-)
XLOC_000953 CABZ01113467.1 coding downstream 753743 3305549 ~ 3330435 (-)
XLOC_000952 NA coding downstream 784325 3296607 ~ 3299853 (-)
XLOC_000951 gpc5a coding downstream 789133 3100244 ~ 3295045 (-)
XLOC_000958 NA coding upstream 533343 4783785 ~ 4785460 (-)
XLOC_000959 FQ790365.1 coding upstream 827929 5078371 ~ 5078488 (-)
XLOC_000960 NA coding upstream 898151 5148593 ~ 5153828 (-)
XLOC_000961 NA coding upstream 944636 5195078 ~ 5196721 (-)
XLOC_000962 NA coding upstream 1100430 5350872 ~ 5352442 (-)
XLOC_000950 CU986306.1 non-coding downstream 1369903 2704604 ~ 2714275 (-)

Expression


Co-expression Network