XLOC_000961


Basic Information

Item Value
gene id XLOC_000961
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5195078 ~ 5196721 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003313
GTTTATTTGCCGAGGAAAGGATTCTTACAGTGCCTGGAAAAGACTGAATGGTCTGAGACAAGAGGGGAAAGACTGATCAATATCTAATCAGAGGGCGGAGGAGAGGAGGTGTTTGTGCACAGCAGACAAACACATAAAACTCTGCTAGCCCATCTACAGATTACAAAgcttgtggggaaaccggagcaccgggaggaatcccatgccaacatgggaggaacatgcaaactctacacagaaatgccaactgaccca
>TCONS_00003314
CATTACACTCTAACCGCTGGTCCTGAGGAACGTGTTTCGCTTGTAAAGCGCGTGTGTGTGGGGCGTGTTTTCCAGAGGGGAGAGAGAAAATGACTGTTAAAATTACCATGCTGTTTATTTGCCGAGGAAAGGATTCTTACAGTGCCTGGAAAAGACTGAATGGTCTGAGACAAGAGGGGAAAGACTGATCAATATCTAATCAGAGGGCGGAGGAGAGGAGGTGTTTGTGCACAGCAGACAAACACATAAAACTCTGCTAGCCCATCTACAGATTACAAAGCTACCGCAGAGACTGGTTCATAACATTTCAGTTACTTGTTATTGACTGAGACCTCCAGTTAAAAGGGTCCAATTACACGTTCAACCTCCTTCAGTGTGTAATGCTGCAGCATGAAGAGGATCTGGGGCTTGTAGACTATCTCAGCACAAAGTCACTTCAACAGTTGCTCTTGAAATTGGTAAATACTGTTTTTGAACTCTAATaatttgaggtaaagttggttttatattcggaaattcagactttctccttaatgatGGCATATTAAGAAAAGGGAAATCAAATTGTGAGGTaaacttggttttatattcggacattccagcctgatctcatgagaaaacgtaagtattttacgttttgccagtttagtgggtaattcgtaCGGGTTatgtcgtacgaaattgtacgattttaaaaaggaggcgtggcacttaaccccaaacctaaacccgaccgtcattggaggatgaacaaattgtactaaattgtacaaattagatcatacgaattcattagaattagccactaaatcaaaatgttacgaattgccgtgagactgcattggaaattcattcattttttaacagtgACTACTAGGGTTGCGTCGATAGATGATGTCATCGTCTATCACCAGTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003313 False 255 lncRNA 0.48 2 5195078 5196609
TCONS_00003314 True 918 lncRNA 0.41 2 5195698 5196721

Neighbor

gene id symbol gene type direction distance location
XLOC_000960 NA coding downstream 41250 5148593 ~ 5153828 (-)
XLOC_000959 FQ790365.1 coding downstream 116590 5078371 ~ 5078488 (-)
XLOC_000958 NA coding downstream 409618 4783785 ~ 4785460 (-)
XLOC_000956 NA coding downstream 944636 4084178 ~ 4250442 (-)
XLOC_000957 FP009765.2 coding downstream 984426 4210498 ~ 4210652 (-)
XLOC_000962 NA coding upstream 154151 5350872 ~ 5352442 (-)
XLOC_000963 ndfip2 coding upstream 157768 5354489 ~ 5394791 (-)
XLOC_000964 mnx2b coding upstream 253056 5449777 ~ 5455502 (-)
XLOC_000965 fn1b coding upstream 307407 5504128 ~ 5543065 (-)
XLOC_000966 nrp2a coding upstream 409739 5606460 ~ 5746030 (-)
XLOC_000968 NA non-coding upstream 863305 6060026 ~ 6085752 (-)
XLOC_000969 NA non-coding upstream 962910 6159631 ~ 6173701 (-)
XLOC_000971 NA non-coding upstream 1201478 6398199 ~ 6400326 (-)
XLOC_000973 CU571320.1 non-coding upstream 1256683 6453404 ~ 6453519 (-)

Expression


Co-expression Network