XLOC_000963 (ndfip2)


Basic Information

Item Value
gene id XLOC_000963
gene name ndfip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5354489 ~ 5394791 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001524
CGCTTTGTTTCTTGGGGCAGGACGCGACAGCATCTGCATGAGCGTTTGCGGTAAATCATGGCTGTACTGTGAATGGAAAGAGCTGCCTTTTTTTGTATATAAAGAATCCGAGCCGTATGATCTCAAGTAAGATCGAGACCCGactttaatttgattaaatcaaGGATTTTCTGGTTTTGTTCACCGCTTGCTGGGCTGGCCGTGTATGAAAATGGACCAGGCGGCGAGCCGCTACCAAGTGTTGCACAATGAGGATGACTCCTCTGAAGGGGCCGCCAGTGCTGAACCGTCCACATCCACCCAGGCCGTTGGCGCTTTGGAGGGAATCAGCAACCTAGCAGTGGATACAGAAGCTCCACCTCCTCCATATGCAAGCGTGGCACTTGGAGCAACAGCTGCACCAGAAAGCACATTTGCAGGGGACTTTCCCGTTCCTCCACCATACAGCATTGCCACGTCTCTGCCCACTTACGATGAGGCAGAGAAGGCCAAAGCAGCAGCCATGGCTGCATCCGCGGTGGAGGTCATTCCACGAGATGAAGATTTTCCGGTTCGGGATGACTTCAGTGATGCAGATCAGCTGAGAGTGGGAAATGATGGGATCTTTATGCTGGCCTTTTTCATGGCCTTTCTTTTCAACTGGATCGGGTTTTGCTTGTCCTTCTGTTTGACCAATACCATTGCTGGTCGATATGGTGCTATCTGCGGCTTTGGCCTTTCTCTTATCAAGTGGATCCTCATTGTCAGGTTTTCAGATTACTTTACCGGGTACTTCAATGGACAGTACTGGCTCTGGTGGATTTTTCTGGTTCTTGGGCTCCTGCTGTTCTTCAGAGGGTTTGTGAACTACCTGAAAGTGCGTAACATGTCAGAAAGCATGGTTTCCTCACTCAGAACCCGCTTCTTCCTCCTGTACTAGAGGTCGCCTCACCAAAACATTCCTCCCTAATGTGAAATTCCTTCATGATTTGCAACCCGTCAAATGAACTGGACTGGATCCCACTGAGGGGAAGaggaagaagagagagagagagagaaaatcaaacacaaaacgAGTATCTCTGCCAAATGTTTTGAACTCAACCCGGTGAAAATGAACTCTGAACGAGTGCAAATCAGCTCCCAGTATTCAGTTTTTTCAGAACTTCCCTGCCTCCCAAAAACTTCTTAATACTGTAttgcaaacatacacacacaaaaacttaccaaacattgcatgaaatgtaatGGATTTATGTGTATCAGCAAAAATGACTAGAAAATATGCAGTCCAGACCAATGTTGGGTACGTTACTTCAAAATAGTAATTATTAGTTACTAATTGTATCATTaaattactttgtctgaaaagtagCTTAATtgctcaatattttatttaattacttgactCAGTTCTACTTAAAATCATCGTAAATATCAAGCATGTGCATCACTGTTTCTTCATCATGTGTAATCGTCTTTGCTTAGTTCTTTGCTTAGTCCAAAGTGCAAAATTTTCATATGTGTCTTTTTTTCCTGTATTTAAATCCGGaattttttttcacacacacaaaccttgCACACCGAGTCCAATACATATGAATTAATCTATtgcaaaataattcataaaacaATAGATGAATTACCGGTGTGCTAACATTCAGGATATGCGCTTGCAGCGAGGTTGCAGTAAAAAACCATGAGctctagcatttacagcgagggaatgacatccgatgccgtacagagtttgttgttgccTTAGAAATAAGTtctattgattacatattatatatattatttacataatgctttcagtatattataacagctcgtcacccagtgataaacacagttattcagcaaaattaatgttgaagtgagcggcgttcgtctgacaggtccatttgcgatagcaccctcccaatagATATTGGGTAggatgaaatggccaagcataCAGCCccaaaatatacaaatatctcattgaaactccaagtgtttttacaagagaagttaaaggcctgtaagtctttggatgccaacaattttgttctgtgtggtcatgtgcaagaaataatgctccatgattaccagattgaAAACTTTGTAGTAccaaaaaccgaggttctgcctagccaaagacaaggaaagaagacggagctaTACAAGGGCTGgctaatcatcaacaagcaaaacaacagcattctgacagcgaactgcacctgtagcagggtatgtgaacttacatgtttatatttcaatctaagcattcagtgtcggCAGTTTAATACACCATACCAACtgtttttgctaaaatcattgctgcaatcaaaagcGGGTAATGTTTATGATTCAGCGTAGCGTAAACTTACCTGACATAAAATAAGAAATGCAGAGTCcaacatttttaattaggtcctcactccattcagctcccctttagccaaagacatctgcagttggcattaaaaccagtgtggtgtacagtaaaaTTTTAGTTTTGTTGAAGCCTGCATTGTTTATAGCAgaggtgctcaatcctgttcctggagatctaccttcctgtacagtttagctcagGGATGGGcgaacttgatcctcgagggccggtgtccctgcagagttttgttccaacactagtcaaacacacctgaacaaactaatcagtgtcttcaagatcacttgaactctatagggaggtctgtttgaatagggttggagctaaactgtgcaggtcaccggccttccaggacagagattgcccacccctggtttagctcctaccctgatcaaacccacctgaaccaattaatcaggacctgaaatccacttgataattacagacaggtgtgtttgataagggttgcaactgaaatctgcagaaggtagatctccaggaacaggattggccacccctggtttataGTGTATGTGACATATTCTGAGACAAAAACGTAATGTGCATGTAATGGACCTTTTTGTAATAACAGAGGtttaataacagaaatttaccagaaatctaaatttaaggaaatttctgtaatttaatgtcagttattttacagtaaatttctgtagattaacggccgttattttacgtttttttttcggcaccccagctgccgtaTATAAACCGTAaagttacagattttttttacagtgcacattttgtaatagacgtgccaggcacgaaagcttgtaACAACAGTAACTAAAGAGGGTGgtgcttagcgaagggtcagttgcTGGATTATATTGAGCATATAGTGTCACACTAGAGGACATGGTTTTCAATGACAAAAATCTATCATTGttttagaaatgtgtatataaaaaaatagccaCTTGTAAAATTAGGCATCTTTTCAATTTATAATAGTTGCCAAATATATGCTTGAGCCAAAATACATAATAACACAGCAGTTTTTATAGAAGTCAAATAACTGAtgacatttactgcattttaattgCTACTCATATTCAGTTCACTACAGTGAAAATGCTACGTCACATCAACAAACTGATTTGGGCTGTTGAATTTATGCACtgcattaagggtgctttcacactagcacttttggtccgcacccaggttcatttgacgtcatagtacggtacgtttagctagtgtgaacgtgtcttctgaactcgggtgcgcaaccgtgaaccgtaccagagtccgcctgaaagaggtggtctggggtacggttcatgagAACTCTAGtatggttcacttctgatgtaaatgcaatcataccaaataacggaagtgaaacgccaactgtacaacaaactatcgttttcataacgttcgttcgttcgtgtgtgtgtgtgtgccacgTTTCGTAACTTGGTGACGCGTGCGGgtctgagccagggcaaacacagtgatgcaCAGGGATGTCTGCTTGTCTACTCCAAAAACAGCTCCTGCAGACGCTGTGTGATGTCTTGaatgtttctaacatttttgaggcagatggacgcgagtcgctttctgcatgtccaaaaccaaaagcttcagttaaagcagaatgtacgcgatgtgcggacgtctttccattttggcaCTTGCTTTCGTGACTGTCGCCTAGCAACggctgtaaacaaaacagcagctcagtgatgcaagcgtaccggggttcagaaggaaaaaagacagtatgaacacaaaacaaccgaggaggtggcaaggggagacaatcgaacttgggtacggtccaggcaattgaaccaagtgtgaaagcaccctaaaagatctgcgtgggactaaattttaaatcccgcttccgccaggttttagcccgaacccgaccgctcctgcttgtattcagcatttgttgtcccgctgcccgacgcgccctgccccgttttctacccgccacgCCCGTTCCTGCTAAAGAGTGGGGGGAGAActaaaccgaaaaccacccagctatacagagtccagacagcctataacaagctgtctgtatcaacacacacacacacacacacacacataagcgcCAAGCaagtgacaaacacacacacaccaacaccaacaaacaagctaaacgcagcatcacgctgtctcattcacacacatacatatgcgaGCGAgcgagtcgggagcgatattgctagactgccgctcccgtccaaaattaaaccagttactgACCGCTCCCGTGCTTTTTTAGGAAATTTATTCCCatgccgcagaaatctggtcgggtcccgcggctgcagaatgcagacctctaccctAAATAACTAATTAGATTACCTAAAAAATAAAGAGAATCCTTTACTTTTTTCagattaaaagtaatttaattacagaaacGAGTTactttgtaattaattacacccaacactggtcAAGACCTCCTATGCAATGTCTTTTAACAAACTTGGTTAGATTGATGCTACTAGACTAGTTTAATTCCCTTTTGCTTCATTGCATCCAAGGCCTTGATTGCATTGCAGTGTCAATGAGAGAAGAATAGTTTTAGGTAGAATTTGACTAGTAAGCTATAATTGCAGTTTCTCCTCTTCTTAACTCTCGCTTAACTTTATAGTAAATGATTAAGTAATTTCATTGATGTGTTTCGAACTGGAAACGGAATTTGTACTTATCCTGAAATATATATTTGCCTTTTGCACCTTGGTTTAGTTTCCTTCCTCCCTCTTTTGATTTCAGTGTTTGTTGTTATTAAGTTGTGCTCAAGCTGTGACCTGCTTAGATGACTTTAGTTACTTGAATGCCTGAATGCTAATGTCATTTGTTTCTATTAATCACAAGCCTCTTCAGCAATATCAGATATTCAGACAAATGCATGGTTAACTCAGCGGATTAACTGACTGATCCAGTAAACAGACAATACTTAAGGATTTTGGATGAGATGATTGTGTGCTGTATGTTTATTCTCTTGTCTTGCATAATGCCAATAAAATTGGAAACTCTGCGta
>TCONS_00001525
TGCAACGTCATGCTTGCGTCACGGACTACTCCTCCCACTCGCTTTGTTTCTTGGGGCAGGACGCGACAGCATCTGCATGAGCGTTTGCGGTAAATCATGGCTGTACTGTGAATGGAAAGAGCTGCCTTTTTTTGTATATAAAGAATCCGAGCCGTATGATCTCAAGTAAGATCGAGACCCGactttaatttgattaaatcaaGGATTTTCTGGTTTTGTTCACCGCTTGCTGGGCTGGCCGTGTATGAAAATGGACCAGGCGGCGAGCCGCTACCAAGTGTTGCACAATGAGGATGACTCCTCTGAAGGGGCCGCCAGTGCTGAACCGTCCACATCCACCCAGGCCGTTGGCGCTTTGGAGGGAATCAGCAACCTAGCAGTGGATACAGAAGCTCCACCTCCTCCATATGCAAGCGTGGCACTTGGAGCAACAGCTGCACCAGAAAGCACATTTGCAGGGGACTTTCCCGTTCCTCCACCATACAGCATTGCCACGTCTCTGCCCACTTACGATGAGGCAGAGAAGGCCAAAGCAGCAGCCATGGCTGCATCCGCGGTGGAGGTCATTCCACGAGATGAAGATTTTCCGGTTCGGGATGACTTCAGTGATGCAGATCAGCTGAGAGTGGGAAATGATGGGATCTTTATGCTGGCCTTTTTCATGGCCTTTCTTTTCAACTGGATCGGGTTTTGCTTGTCCTTCTGTTTGACCAATACCATTGCTGGTCGATATGGTGCTATCTGCGGCTTTGGCCTTTCTCTTATCAAGTGGATCCTCATTGTCAGGTTTTCAGATTACTTTACCGGGTACTTCAATGGACAGTACTGGCTCTGGTGGATTTTTCTGGTTCTTGGGCTCCTGCTGTTCTTCAGAGGGTTTGTGAACTACCTGAAAGTGCGTAACATGTCAGAAAGCATGGTTTCCTCACTCAGAACCCGCTTCTTCCTCCTGTACTAGAG

Function

symbol description
ndfip2 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP2 (Nedd4 family interacting protein 2).

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0030001 metal ion transport biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050699 WW domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2662 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP2 (Nedd4 family interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000033928

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001524 False 5436 mRNA 0.42 8 5354489 5394752
TCONS_00001525 True 960 mRNA 0.50 7 5363569 5394791

Neighbor

gene id symbol gene type direction distance location
XLOC_000962 NA coding downstream 2047 5350872 ~ 5352442 (-)
XLOC_000961 NA coding downstream 157768 5195078 ~ 5196721 (-)
XLOC_000960 NA coding downstream 200661 5148593 ~ 5153828 (-)
XLOC_000959 FQ790365.1 coding downstream 276001 5078371 ~ 5078488 (-)
XLOC_000958 NA coding downstream 569029 4783785 ~ 4785460 (-)
XLOC_000964 mnx2b coding upstream 54986 5449777 ~ 5455502 (-)
XLOC_000965 fn1b coding upstream 109337 5504128 ~ 5543065 (-)
XLOC_000966 nrp2a coding upstream 211669 5606460 ~ 5746030 (-)
XLOC_000967 pard3ba coding upstream 403757 5798548 ~ 6028876 (-)
XLOC_000968 NA coding upstream 665235 6060026 ~ 6085752 (-)
XLOC_000969 NA non-coding upstream 764840 6159631 ~ 6173701 (-)
XLOC_000971 NA non-coding upstream 1003408 6398199 ~ 6400326 (-)
XLOC_000973 CU571320.1 non-coding upstream 1058613 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 non-coding upstream 1747248 7142039 ~ 7142143 (-)

Expression


Co-expression Network