XLOC_000964 (mnx2b)


Basic Information

Item Value
gene id XLOC_000964
gene name mnx2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5449777 ~ 5455502 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001526
TGCGCGTAAAACGCAGCTATCAGCGCAATTACCTGCAACTCTAAACACAACAAAAGTGTTGCAATGGAAAAGTCAAAGAACTTCAGGATCGACGCCCTTTTAGCTGAAGAACCACATCGAGGGAGCCGAGAAGTTTCCCCTGGACTGAGCAGCGACAGCCCGACTGGgagtccggtgtcctgcaggcgCGGTGACACCCCGTCCCCCCGCGGGACCCCAGGTGCCATACACCTCCAACCCGGAATCATACCGAAACCAGGGCTGCTCAATCTCCCTCACCCGGGACTCACTTCTATCCCAGGCATGTACACGACGCCCATGTACCCCATTTCAGCATTGGGAGGTCAGCACCCTGCACTAGCGTACACTGGGTTCACCCAGCTGACGCAGCCGTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGATCATTACCGCTGGAGCATTGGATACGAGCTGGCATCATGGTACCACGACTGCCCGATTACACCTGTGAGTGGGGTAGCATTCAGATGACTGCCCCTCAGTCTGGTTTGATGGGTAAATGTCGAAGGCCTCGGACAGCATTTACTAGTCAACAACTACTGGAGCTGGAAAACCAGTTTAAACTTAATAAATACCTTTCCAGACCCAAACGCTTCGAAGTGGCCACATCTCTAATGCTGACTGAGACACAGGTGAAGATCTGGTTCCAGAACCGGCGGATGAAGTGGAAGCGCAGTCGTAAAGCTAAAGAGCAGGCGGCGCAGGTGGAGGTGGAGCGGCAGCGTGGAGGAACCAAACCCAGCGGACGGGACAGCAGACGCGCTCCAGCAGCTCCCAGTGTGGAGGaacaggaggaagaggaggaggaggaagaggagataGATGAAGACGAAGAGGACGAAGAGGACGGACAACACAAGTTCATCAACAACAGCCTCAGCGTGTCCCGATCCACAGACTTTCTGCACCACACCGCTGCGTTATATCATCCCGACAGCCCCTTCTCGGAGGACGACATAGAGGAGCTGCATGGAGGAGAGAGGAAGATCCGGGCAGGGttatgaagacttgtttaaattACTATGGAACTTTGACTCTATGGTAGCATTAGGGGTAAATATCAGCCAGCCTTTTAGACACTTATCAGTGATGGCACTGGACATTGG
>TCONS_00001527
CGTAAAACGCAGCTATCAGCGCAATTACCTGCAACTCTAAACACAACAAAAGTGTTGCAATGGAAAAGTCAAAGAACTTCAGGATCGACGCCCTTTTAGCTGAAGAACCACATCGAGGGAGCCGAGAAGTTTCCCCTGGACTGAGCAGCGACAGCCCGACTGGgagtccggtgtcctgcaggcgCGGTGACACCCCGTCCCCCCGCGGGACCCCAGGTGCCATACACCTCCAACCCGGAATCATACCGAAACCAGGGCTGCTCAATCTCCCTCACCCGGGACTCACTTCTATCCCAGGCATGTACACGACGCCCATGTACCCCATTTCAGCATTGGGAGGTCAGCACCCTGCACTAGCGTACACTGGGTTCACCCAGCTGACGCAGCCGTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGATCATTACCGCTGGAGCATTGGATACGAGCTGGCATCATGGTACCACGACTGCCCGATTACACCTCTGCCCCTCAGTCTGGTTTGATGGGTAAATGTCGAAGGCCTCGGACAGCATTTACTAGTCAACAACTACTGGAGCTGGAAAACCAGTTTAAACTTAATAAATACCTTTCCAGACCCAAACGCTTCGAAGTGGCCACATCTCTAATGCTGACTGAGACACAGGTGAAGATCTGGTTCCAGAACCGGCGGATGAAGTGGAAGCGCAGTCGTAAAGCTAAAGAGCAGGCGGCGCAGGTGGAGGTGGAGCGGCAGCGTGGAGGAACCAAACCCAGCGGACGGGACAGCAGACGCGCTCCAGCAGCTCCCAGTGTGGAGGaacaggaggaagaggaggaggaggaagaggagataGATGAAGACGAAGAGGACGAAGAGGACGGACAACACAAGTTCATCAACAACAGCCTCAGCGTGTCCCGATCCACAGACTTTCTGCACCACACCGCTGCGTTATATCATCCCGACAGCCCCTTCTCGGAGGACGACATAGAGGAGCTGCATGGAGGAGAGAGGAAGATCCGGGCAGGGttatgaagacttgtt

Function

symbol description
mnx2b Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including endodermal cell; lateral mesoderm; motor neurons; spinal cord; and spinal cord neural tube.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040415-2 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including endodermal cell; lateral mesoderm; motor neurons; spinal cord; and spinal cord neural tube.

Ensembl:

ensembl_id ENSDARG00000030350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001526 False 1152 mRNA 0.54 3 5449777 5455502
TCONS_00001527 True 1031 mRNA 0.56 3 5449870 5455498

Neighbor

gene id symbol gene type direction distance location
XLOC_000963 ndfip2 coding downstream 54986 5354489 ~ 5394791 (-)
XLOC_000962 NA coding downstream 97335 5350872 ~ 5352442 (-)
XLOC_000961 NA coding downstream 253056 5195078 ~ 5196721 (-)
XLOC_000960 NA coding downstream 295949 5148593 ~ 5153828 (-)
XLOC_000959 FQ790365.1 coding downstream 371289 5078371 ~ 5078488 (-)
XLOC_000965 fn1b coding upstream 48626 5504128 ~ 5543065 (-)
XLOC_000966 nrp2a coding upstream 150958 5606460 ~ 5746030 (-)
XLOC_000967 pard3ba coding upstream 343046 5798548 ~ 6028876 (-)
XLOC_000968 NA coding upstream 604524 6060026 ~ 6085752 (-)
XLOC_000969 NA coding upstream 704129 6159631 ~ 6173701 (-)
XLOC_000958 NA non-coding downstream 664317 4783785 ~ 4785460 (-)
XLOC_000971 NA non-coding upstream 942697 6398199 ~ 6400326 (-)
XLOC_000973 CU571320.1 non-coding upstream 997902 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 non-coding upstream 1686537 7142039 ~ 7142143 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_02723315_02728716 MNX2B coding CI01000299 null 2723220 ~ 2728753 (-)