XLOC_000966 (nrp2a)


Basic Information

Item Value
gene id XLOC_000966
gene name nrp2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5606460 ~ 5746030 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001533
ACACACATACTgactcactgacacacacacatacacacactcagacTCGCGCTTTCGAGCACATCTACACGCGCTGCCACAGCAGTGCGCTTCAACACGCTTCTGTGCGCAACACCAATTCCTCTTTTGCCTGGCAGTTTGGACAAAACTTGCTGCCTCCTGGGTATGACTGAACGACTAACGAGAGCAAGAAGATAGCAGAACTCTTAAACTCGGAGGGCTGCGGGCGATTAAGGGAGAAATCCCTGCGGAAACCTCAAAGCATCGGAGACCGATAAGGCAATGGAGCGCAATAACGCACGCAAATCTGAGACGGCGTTATAACGGAATACAGTTGAAGACCtctaatttagttttgtttgaagAAGAGGAGGCTGATTTATGTCCAAGCATGACTTTTTATGAATACATGAAATAGATCATGTTTTGCACACTCTGCATTTGCTGTGCGCAATGGGCTCAACAGAACTGCATTTGAATATGAAATTCTGAGCATTATTTAGACAAAAAGGCTGgttttataatattttctcaGTCTGAGTTTGCCATTTGTTCTTGAAGAAGATAACTAGTTGAACACAGCTCACTTCTTCAAGCACATTTCGGAAAGATGGATTTCTGGATATCACACCAAGGGATTGCATTTATCTTTTGCTTCGTTCTGAAAGTCAGCGCAAAAGAAAGTGAGACATGTGGAGGCCACCTGGATGCCAGCGGAGCCGGCTACATCACATCTCCAGGATACCCTCTGGAATACCCGCCCCATCAGAGCTGTCAGTGGGTGATCAGCGCACCCGAACCCTCACAGCGCATCGTGCTCAACTTCAACCCCCACTTTGAGCTGGAACGCCTGGACTGCAGGTATGACTTCATCGAGATCCGAGATGGGAATTCGGAGTCTGCAGACCTGCTGGGCAAACACTGCAGTAACATCGCTCCTCCCGCCATCATCTCCTCCGGTCCCTTCATCCACATCAAGTTTGTGTCTGATTACGCACACCAGGGTGCCGGTTTCTCCCTGCGCTACGAGATCTTCAAGACTGGAGCTGAGCATTGTTTCCGTAATTTCAGTTCCCCAACCGGAGTGATCGAGTCTCCGGGTTTCCCTGACAAGTATCCACATAATTTGGAGTGCTCCTTCATCATCATCGCTCCTCCTCAAACCGAGGTCACTCTCACCTTCCAGACCTTCGACCTGGAGAACGACCCTCTGCTGATGGGGGAAGGAGAGTGCAAATACGACTGGCTCGATGTCTGGGACGGCCTGCCGCAAGTGGGACCCTTGATCGGACGATACTGTGGCTCGAAGATCCCTCCAAAGATCCAGTCCTCCACGGGCCTTCTGTCGCTGTCCTTCCACACTGACATGGCTGTGGCCAAAGACGGATTCTCGGCCAGATATAACATGACCCACAAGGAAGTTAGCGACACGTTTCACTGTAGTAATGCGTTTGGACTGGAGTCTGGGAAGATCTCTGATGATCAGATTTCGGCCTCCACTTCGTTTTATGATGGACGCTGGCAGCCTCGTCAGGCACGTCTGAACAATGAGGACAACGCCTGGACGCCCGGTGAGGACAGCAACAAGGAGTACATACAGGTGGATCTTCAGTTCCTCAAGGTTCTGACCGGCATCGCTACTCAAGGAGCCATTTCCAAAGAGACCCAGAAGTCATACTACGTCACCACCTTCAAGCTGGAAGTTAGCACTAACGGAGAGGACTGGATGTTTTATCGGCATGGCAAAAACCACAAGATTTTCCATGCCAACACTGACCCGTCGGAGGTGGTTTTGAATCGTATCCCTCAGCCTGTTCTGGCCCGCTTTGTCCGCATTCGACCACAGACGTGGAACAATGGCATTGCACTGCGCTTTGAGCTTTATGGCTGCCAGATTACAGATGCTCCTTGTTCAGAGCTCCAGGGAATGTTGTCAGGACTCCTCCCGGACTCCCAGATCTCAGCCTCCTCAATGCGGGACCTCCACTGGAGCCCTGGAGCGGCTCGTTTGGTGGCCAGTCGATCAGGATGGTTTCCCAGTCCTGCTCAGCCTATAGCTGGAGAAGAGTGGCTCCAGGTAGACCTCGGGACACCCCGGATGGTGCGTGGAGTGATAACTCAAGGAGCGCGGAGTGGTGATGGAGGAACCAGCTCAGAGAACCGGGCTTTCGTACGGAAGTACCGCCTCGCACACAGCCTGAACGGGAAAGACTGGAACTTTGTAATAGATAGCAAGACTAGCATGCCTAAGCTGTTTGAGGGGAACACGAACTACGACACCCCAGAGCTGCGTCGGTTTGAGGAGCTGCCAGCTCAGTTTATCCGCATCTATCCAGAGCGCTGGTCTCCGGCAGGCATCGGAATGAGAATGGAAGTATTGGGCTGCAACCTGCCAGAAACCTCCACACCAGCGCTGGAGACGAGCAAACCAACACAACCGACCTCAGTAGAGACCAGCACGACACAGAAACCCAGTCCAGTAACCAGCGCTGCCCTGCCGTCTCACAAAGGACTGTGTGATTTTGAGCAGGGATGGTGTGGTTGGACCCTCGACCTGGATTCTGACTTCAGCTGGGTTATGCACAGCTCCAGCAAAAGCTCTGCCTTGGGTCAAAGTCATAATCTCTCCATGGGCTCAAACAGTTTGGGAAACTACCTGTACATCGAGGCTAGTCCAGAGACGCAGGGCCAGAAAGCTCGCCTCTTCAGCCCGGGTGTGGATCCAGACACGGGACCCCTGTGCCTGATGTTCTCCTACCAGCTGGAGGATCAGGGCACTCTGAGGGTCCTGCTGCAGAACAAACAGCAGGAGAAGACGCTGCTGTGGTCCCTCAGCGGAGACCAGCAGCCCATCTGGAGAGAAGGACGTACCATTATTCCTCGATCCCCTGATGAGTTAAAGGTGGTAATCGAAGGATTTTTCGAGGGTACCAAAGGCCACATATGGATTGATAACATTCACATGAGTGGGAACACACCGCTGGAAGAGTGCACTCAGCCGTTCTCCGCGTTTCCTCCGGACATGATCGTTAAAAAACCAGAGGTTGGAAATGGCCGTCTCTTCACCGGGAAGGACCACATAAATGCAGGTTTCCAGTTTCCAGAGTGGGGCACGGCTGAGACCCCATCGGAGCCCCCTGTGACCCATGTTATCGATAAAGACAACTCATGGCTGTACTCTCTGGACCCTATTCTCCTGACCATCATCGTCATGAGCTCTCTAGGAGTTCTTCTAGGTGCTGTTTGTGCTGGCCTACTCCTTTACTGCACCTGCTCATACGGAGGCTTAACGTCTCGCTCTTCCACCACTTTGGAGAACTACAACTTCGAGCTATACGATGGGATTAAGCACAAAGTGAAGCTCAACCAACAGCGCTGCTGCTCCGAGGCTTGAGGAAAACAGATGGGGTGATATCAAGTATCCTAAAATGACCTCAAAGTTACCCGATTTGACTCTTTGAAGAGAGACGAGCCTCATCTCTTAGTATTCCTGGAATGCATGTCCATCTCAGCTGGAGAGCTCCTAAACTGAACTTCTCCTGGAGCTTATTTTCCAAGCAGTGCTTACTCAGCTCTAACGCTGCTGCCAAGGACTTCCTCGTCTTTCACTGGATTACATCAAAAAAAGGGGAGCGTTTGGTGCCACAAAGACTGAAACACTTTCCAGGGCTCAGCCTCAAAAATAAATGTCGATACATATCAATGTTCTGCTATTCCAAAAAGATAATAGTATATCAGCTTAGATTTCTAAGAGGTCTAGTTTTGAAAATGGGAGATCTGTGGCCGGACCTTCGAGCCATGAACTTCTGTCCACCGTCATTCCCCAAAGTACTTTTTGTGGCCTAGGATATGGTGCATTGTTTTAAAAGCTTTGATGGGTTGGTTTAATGTTGTTCTATTTGGGTTATTTTTATTTCCTTCGCAGAAAAGTTTGCCATCATTATTGTGTTTACAACACCCGACCATTTTGTGTTTCTCTTGTAATTCTGACAGTTTGGAAATGGAAACGACAGATAAAAGGTTCTTATATTTAGTTTTAGGCATTATGTGTTTGGTGGATtgtgttctgaaaaaaaaaggcACCGCACTTGTCTAAAACAATTGAGGATTTTGTCAGTGCAACCTATGGATTGCTGTAACCGAGAGACAGCTAACGTTGTGAGCTTTGGTCTAGTAAACAGGCATTAAGTAATGTGGGGAAAGGCTGCCGCATACTGAAGGCATGGATTTGAATTCTCTTACTTCACTCCGGGCCTTAAAGAATGCTACTGCTGTTGGCTCAAATAGGTTCATTTCCGCTGcttgtattttttaaaagctcTAAAATCGACACCATTTTGCTGTGCCAGTCATTTATAATACTGTACATCTCGGCTTTAGGGTCAAGCAGATATTTTTTACACATCAAAATGATTGTTTGAAGTCTGTAAGAGGTCAAACATTTTAGATTTGGATTGATTTGAAGGATGAAAACAAAAGTGTATacagaaatattttatatatttttaaaagtgaaagcCAAGATGAGTGTTATGAAACCTGTCAATGGTGgaaaatattaattcatatatatattaaaacattttgttcTTTTAGGTTACAGTTTTTGCAAACGGGTTAGGACCTAACACTGAGCCTTGAGGAACACCAATACTTTAAAATGCAACACCTTTCCTCTGTTTATTTCCCTGATCTTTcccttttcagattttttttgtttccatGCTAAGGCTTTATGTTAACAGGAGACAGGTTGGTTGTAAATCTGCTCCCCTGTGGTTTTCAAAGACTGAAAAAAAGGCGGAAGACAGATGCCGTAAATCTTTACCTACTTGCTCAGATGGGATTCCTCAGCCTCATGCTCAAAAACACAATGGAGTCGGTGGAAGTAAATGCACCCAAAGCACACTACACCTCTGCAGAATAAGACACACGATGAGAGTCTGGGATCTCCGATAAAGAGTTTTAAGGCACTGGTAGGCAAGCTTAGATATTTCTACTGAACCCTGCTTGATCCACACATGTACTTCTTGAAGAGTCTTGCTACTGGACCCCTGGACATTTGCAAGTGCCTTGGAGCTACTCTGTTCCAGCCTCGGCTTTGGACCTGAAAAAGACTTCTTTGGAGCGTTTGTCTGTCTTAAACACTCGATATACTTGAGAAATCACAGCACTGGGTTAAATCCCAGTCTCTCTTTGGACACTTTGTACAGGAAATGTGCtttttatgatgatgattattgttattatgattatttaataaaGGATTGTTAACATA
>TCONS_00001534
ATGGATTTCTGGATATCACACCAAGGGATTGCATTTATCTTTTGCTTCGTTCTGAAAGTCAGCGCAAAAGAAAGTGAGACATGTGGAGGCCACCTGGATGCCAGCGGAGCCGGCTACATCACATCTCCAGGATACCCTCTGGAATACCCGCCCCATCAGAGCTGTCAGTGGGTGATCAGCGCACCCGAACCCTCACAGCGCATCGTGCTCAACTTCAACCCCCACTTTGAGCTGGAACGCCTGGACTGCAGGTGAGGAGAAAGTCAAAGGAAATTAGCtggaaaaaagaaacattaaGCTCTAGTCTTACGGAATGACGAACGATAAGGAAGTGCGTGCAATTAATTTACCTCCGATGGAGCATTCGCAAACCCTGCCCTGTGTGCTGAATTGGAGATGAGGCGTAAGCA

Function

symbol description
nrp2a Enables identical protein binding activity. Acts upstream of or within neural crest cell migration; regulation of vascular endothelial growth factor receptor signaling pathway; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial vasculature; cranial neural crest cell; fin bud; and nervous system. Orthologous to human NRP2 (neuropilin 2).

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0030154 cell differentiation biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040611-2 Enables identical protein binding activity. Acts upstream of or within neural crest cell migration; regulation of vascular endothelial growth factor receptor signaling pathway; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial vasculature; cranial neural crest cell; fin bud; and nervous system. Orthologous to human NRP2 (neuropilin 2).

Ensembl:

ensembl_id ENSDARG00000096546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001533 False 5278 mRNA 0.47 17 5606460 5746030
TCONS_00001534 True 410 mRNA 0.50 2 5728350 5745420

Neighbor

gene id symbol gene type direction distance location
XLOC_000965 fn1b coding downstream 63395 5504128 ~ 5543065 (-)
XLOC_000964 mnx2b coding downstream 150958 5449777 ~ 5455502 (-)
XLOC_000963 ndfip2 coding downstream 211669 5354489 ~ 5394791 (-)
XLOC_000962 NA coding downstream 254018 5350872 ~ 5352442 (-)
XLOC_000961 NA coding downstream 409739 5195078 ~ 5196721 (-)
XLOC_000967 pard3ba coding upstream 52518 5798548 ~ 6028876 (-)
XLOC_000968 NA coding upstream 313996 6060026 ~ 6085752 (-)
XLOC_000969 NA coding upstream 413601 6159631 ~ 6173701 (-)
XLOC_000970 mdh1b coding upstream 472602 6218632 ~ 6225285 (-)
XLOC_000971 NA coding upstream 652169 6398199 ~ 6400326 (-)
XLOC_000960 NA non-coding downstream 452632 5148593 ~ 5153828 (-)
XLOC_000959 FQ790365.1 non-coding downstream 527972 5078371 ~ 5078488 (-)
XLOC_000958 NA non-coding downstream 821000 4783785 ~ 4785460 (-)
XLOC_000973 CU571320.1 non-coding upstream 707374 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 non-coding upstream 1396009 7142039 ~ 7142143 (-)

Expression


Co-expression Network