XLOC_000967 (pard3ba)


Basic Information

Item Value
gene id XLOC_000967
gene name pard3ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5798548 ~ 6028876 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001535
AAGCACTCAAAGATATTTTACTGACAGCAGTGTTTGAAAAACTGGAGCTCCAGCAGAGGGCGCTAGTGAGTCCCGGGGGCAGTTTTGCATCCGGTCGCTCCAGTCCGGACCACTCTGAACCCGAACTCAACATCCTGCATCCGTACCTGAGCAGTGAGATAGAGGTCACTCCTTCTGCCCTCAAATCAACCACGCCTCTCTCAGTGCGGAGCAGCAGTGACCCCGCCCTCGCCCCGCCCCTCGATGCCATTTCTCTGGACTCTGAGGACTCCAGCAGACCACAGTCCACTGGAGTTGCTCCACCAGTGACTGTGAAGGGCGGAGCCATGGATAAACTTAAGGTAGACAACCTGATCTCCAGGAATGGACAAGACACATTAAGaagtCTCACGCGGACGGTGGAGATTTCTGGAGACCATGGGCCTCTGGGAATCAAAGTCATACCGTACTGCTCTTCACTAAGTGgaagGACTCTGGGTCTGAACATTCGAGCCATTGAGAAGAACAGCCGCTCAGAGAGAGAGAAGATCTTTGAAGAGGACGAGTGCATCGTGCAGATCAATGACGCCGAGTTAATAGACAAGTCCTTTGCTCAGTCTCAAGAGGTCTTCCGCCAGGCGATGTCCTCCTCCTCTACGTCTACTGTACATTTAGAGGTGCTTCCTGTTGCAAACAAGCTACGCTACGAAAAGAGCCTCATCGGACAGCTCTTCAACAGCACCGAAACAAACCCTGCGGTTCCTAAAATCAAGAGTCCCTTCTTGGTTCGTAAACTTACTCCAAGTAATACAGCGACGCCGTCGCCTGAGCCTGCTGCCTCACAAACCCCACCCATAAAGGAGGAGGAGCTTCAACGTGCAAGACACACCCCCGTTGAGTTGAATCATCAGAGCAGCACACCTTCTCCTCCCGTCAGCACATCACCTACACTGAGGGATCACAGTGAAAGCCCGGCTCTCGCTTCAGTGGTTCATATGGTGACCAAAAAGGCTGGGAAGAGAATGAGGATTGATTTGAAGAAAGGTACGGAGGGCCTCGGTTTCACTGTGGTAACCAGAGACTCGTCCCTTCATGGTCCAGGACCCATTATGGTCAAGAGCATCCTGCCCCGCGGAGCTGCTGTGAAAGATGGCCGGCTCAAGTCTGGAGACCGAATCCTGGAGGTAAATGGAGTGGACATCACTGGACGAACACAAGAGGAGCTGGTGGCTATGCTGAGGAGCACCAAACTAGGAGAGACCGTGTCCTTGATAGTGGGAAGACAAGAAGAGTTTTTGCCCAGAGAGCTGAAAGGCGAGGTGTCAGGTCCACTGGTGTCTGAAGACGGCCGAGAGCAGCTGATGTTTGAAGTTCCTCTGAATGACTCGGGCTCAGCTGGTCTGGGGGTCAGTCTGAAGGGTAATAAGTCCCGAGAGACCGGAGAAGACCTGGGCATCTTTATCAAGTCCATCATCCACGGCGGTGCTGCAAACAAGGATGGTCGCTTGCGGGTCAACGACCAGCTGATAGCGGTGAACAGTGAATCTCTGGTGGGACGCTCCAATCATGATGCAATGGAAACCCTGCGGCACTCCATGTCCACCGAAGGAAACCTGAGAGGAACCATCCAGCTGGTGGTTCTGCGCAGTCTGGAGCGCTCACCTGCTCAGGAAAATTATGAAGCCAGTCAAAGTGCCAACAGAAACGACTCTCCTGTTCTGCGTCGTCATCACCACCATCCGAACAGCAACACCACCAACAATTCAGTACCACAATCCACAGTGAACGAGTCTGCTCCTGCTCCATACAGACCTCATGGTGGACGTCCGGAGCTGCTGGAGGTGGATTATGGGGAAGATGATTTCCCTCCTCCACCTTCTGATCTGGACCTGCTGGAAACAAACCCTCCTCACAAACACCAGCCAAATCGGCCTGAAATGGAGCCTTTTTCTCAAGTGAGCCACCCCACCAACCAACAATACCCTCAACGACAGAAAGCCCCAGAATACTCCACCAACAAGACGTCCAAGAGCATGGATTTAGTGGCAGACGAGAGTAACATGGCCTCCATTCAAGGACAGAGACCTGAGCCCATCTCCTCCAACGGCACGGCGCTCGGACCCCGTTTAGGCCTACGGAAGTCCAGCTCACTAGAGAGTCTCCAGACGGCGATGGAGGAGGTCAGTAAAGATGAAGTGCCCTTCCATCGTCCACGTGCACACATGGTGAGAGGCCGAGGATGCAACATGAGCTTCCGTTACGCCATCGACAAATCCTACGAAGGGCCTTCTGAAGCAGAGGATGATGACTCTGAGGAAGACTCCGGCAGAGATACACCGGCCAGCAGCTCCTCGCGACAGGAACTCGACAATGACAGGAAGGTCAAGAAGAAGAAAACCAAgaagaagaaagagaaaaagaccAAAAAGAAGGATGAAGCTGAAGATCCTGATAAAAAGACCAAGAAAAAAGGATTCGGATTGCTGAGCATGGAGACCTCACCTGACCTCAGATCAGTGCAAAAGAATATGTTTGGGAGGAAAAACAAAGAGGACAAGACCAAATCCAAGGCTAAACAGATGGTTGCTGTGAGCGAAGAGGAGGTGGACAAGAGTGAACCAGAGTTGTTTCTGTCcaaGAGTGAAAGGAACAGTCCTGCTCCTGAGCGTGTGATCTTCCCAGACGTTGAAGATGATGATCTGGATCCAAACTACGCTCGCATTAACAATTTCAGAAATCCACCTGCCTCTAGCCAATCCCCTTTGCCACCTGGAGCTCCAACCAATAACTACGCTCAGCCTGCTGTGCCCGCCCCCAGCAGAGAGCCGCCCAATGAGGACGCACTAGAGGGGCTTTATGCAAAAGTGAACAAGCAAAGAACCGCCCCTCCAAAGACTGAAAGTAATGAAGAACGATTGCAGCAAATCAGGAATCAGCTTCAGCAGATCAGACCAGCTCCATCCTATGAGGACCTGACCGCTCGAAGACGACCAGAGTATGACCCTTCACGAATCAGAGGGCCTGATTCTAGAACAGCTCCCAGATACAATGACGCAGATCGCCTGTACACCTCTGTGCCCAGGAAGAAGCCTGTTGACGAATATCCAAACCAGAACTGGTCTAATCAGAGAGACCCTGTCCTTTACCCGAACCCCATTTACGACAATCCTCCACGCTCGCCTCGTCTGCCTGTACCCAAACCCACAGAGACCCCAGGCGCTCATTACCCTTCATCCCCAGCAAAACAGATGATGAGGCAGGACGTCCCTCCGTCATCCAATCCAGGAGCCAGAGAGCCACCGCGATATGAGGCGCTAAACCAGGGCAACTACCGAACGGCCAGTCCTGACCGCTACAGCCCATACACAGATGAACAATATCAAGACCCTCGGCGGAAAAACCCAATGATCGGAGCCGTCTAGAGGAGAAAGAGGAAGGTTGGTGCTGAAATGCTGAAGTGCTTGTGTAAAAATGAAGGTAATTTTGTACAATTATGAGACCAATCTAGTTTTTGGAAGATGTACGGTATGAGGAGAAAATGCTAATGATGGTAGCTTGACACAGCCATGGATTACTCCAAAGTAAACAAGGTAAAGATTGTTAAAGATTTACTCCAAACT
>TCONS_00003317
TCAGCTGACAGCAGTGTTTGAAAAACTGGAGCTCCAGCAGAGGGCGCTAGTGAGTCCCGGGGGCAGTTTTGCATCCGGTCGCTCCAGTCCGGACCACTCTGAACCCGAACTCAACATCCTGCATCCGTACCTGAGCAGTGAGATAGAGGTCACTCCTTCTGCCCTCAAATCAACAACTTGCCACAGATGAGAACAAACGCAGCTTATATCCATCACAAAC
>TCONS_00003318
TCAGCTGACAGCAGTGTTTGAAAAACTGGAGCTCCAGCAGAGGGCGCTAGTGAGTCCCGGGGGCAGTTTTGCATCCGGTCGCTCCAGTCCGGACCACTCTGAACCCGAACTCAACATCCTGCATCCGTACCTGAGCAGTGAGATAGAGGTCACTCCTTCTGCCCTCAAATCAAGGTTTTGCCATAAAGTGGCCAACGCTCAGCCATGTTAAATCTGTCACAGCAGCTG

Function

symbol description
pard3ba Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Is expressed in several structures, including EVL; intermediate cell mass of mesoderm; periderm; sensory system; and tegmentum. Orthologous to human PARD3B (par-3 family cell polarity regulator beta).

GO:

id name namespace
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0007155 cell adhesion biological_process
GO:0051660 establishment of centrosome localization biological_process
GO:0008104 protein localization biological_process
GO:0043296 apical junction complex cellular_component
GO:0005912 adherens junction cellular_component
GO:0005938 cell cortex cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-12 Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Is expressed in several structures, including EVL; intermediate cell mass of mesoderm; periderm; sensory system; and tegmentum. Orthologous to human PARD3B (par-3 family cell polarity regulator beta).

Ensembl:

ensembl_id ENSDARG00000092671

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001535 False 3599 mRNA 0.52 23 5798548 6028876
TCONS_00003317 False 220 lncRNA 0.53 2 6014730 6024808
TCONS_00003318 True 228 lncRNA 0.54 2 6021516 6024808

Neighbor

gene id symbol gene type direction distance location
XLOC_000966 nrp2a coding downstream 52518 5606460 ~ 5746030 (-)
XLOC_000965 fn1b coding downstream 255483 5504128 ~ 5543065 (-)
XLOC_000964 mnx2b coding downstream 343046 5449777 ~ 5455502 (-)
XLOC_000963 ndfip2 coding downstream 403757 5354489 ~ 5394791 (-)
XLOC_000962 NA coding downstream 446106 5350872 ~ 5352442 (-)
XLOC_000968 NA coding upstream 31150 6060026 ~ 6085752 (-)
XLOC_000969 NA coding upstream 130755 6159631 ~ 6173701 (-)
XLOC_000970 mdh1b coding upstream 189756 6218632 ~ 6225285 (-)
XLOC_000971 NA coding upstream 369323 6398199 ~ 6400326 (-)
XLOC_000972 klf7a coding upstream 374675 6403551 ~ 6494384 (-)
XLOC_000961 NA non-coding downstream 601827 5195078 ~ 5196721 (-)
XLOC_000960 NA non-coding downstream 644720 5148593 ~ 5153828 (-)
XLOC_000959 FQ790365.1 non-coding downstream 720060 5078371 ~ 5078488 (-)
XLOC_000958 NA non-coding downstream 1013088 4783785 ~ 4785460 (-)
XLOC_000973 CU571320.1 non-coding upstream 424528 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 non-coding upstream 1113163 7142039 ~ 7142143 (-)

Expression


Co-expression Network