XLOC_009676 (bmper)


Basic Information

Item Value
gene id XLOC_009676
gene name bmper
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7154266 ~ 7195000 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019405
AGAGAGGGGGCAGATATCTGTGGACTGGAGGACGGACTTCCACCGCGGGAATGTTTAACTGGAGCTCTGAAGCCGGCGTCGTATCCGAAAAGTCTGTCAGAAATTATCCGGAGCGCTTTGACCAAACCTGGAGCTTCAGTCGGATCATGGCAGTGTCATCATCCATGCGCGCGCTCGTCTCCAGAAGACCACTGGATCTTATCTCGGTTTTAAACTCTTTGTGGAGTTTGTGACCTGCTAATCTGGATCTTCAGAAAGTTGTTTCGCCGCTgaggtgtttttgtttgtttgtttggaccGTTATTATAATGTTGAGGTGATTTTTCCGTCGCGCGAAGCTTCGCTGAAGGTTTCAGGATTATGAGTCCCTCATGACACCGATGTCTCCCTCTTGCTGGATTTTAAAGAAGACCGTTTCTACAGGCTTGGGATACTTTggtttttcattttgtttctttACCCCCCGTGCGTCTGGAGCGAATTTAGGATGCTGTGTCTGTCTCCTCCAGTAACCTACAACCTGTTATTCTGGTTTTTAATTCTCCAAACGCCACAATCAACTGCACCTTTAATCACCGGTACAGAGGCTAGCTGTGAAAACGAGGGAGAAGTGTTACACATCCCCAACATCACAGACAACCCCTGCATCTCCTGCGTCTGTCTGAATCAGAAAGCGGAGTGTAAGCAGGAGAAGTGTGCACCGCTGGCAGAGGACTGTGCGCTGGTGGTCAAACAGACGGGAGCCTGCTGTGAAAAATGCAAAGGTTGTCTTCTGAAAGGGACGTCCTACAACAGTTCCCATCACTGGATAAGCCCTGTGAAACCCTGTGTCACGTACAGCTGTCAGGAAGGTGTCATCACTGAAGCAGAGATGAGGTGTGTCATTCACTGTAAGAACCCTAAAATCCACCCCAAGAAATGCTGCCCTACATGTCCAGGGTGCATTTTTGAGGGGAATTTATATAAAGAAGATGAAGAATTTCACCCTGAAGGGAATCCCTGTATTAAATGCGTCTGCACTggAGGGCAAAGCATGTGTCATAAATTGGTGTGTCCTGTTCTGTCCTGCCCGTCTCATCTTACCCACACTCCACCTGGCCAGTGCTGTCCAAGATGTCGGGGTCAGAGGAGGGTGTTTGACTTATCGCCAGGCAGCTGTTTGTTCCATAGTGAGGTTTATGAGAACGGCTCCTCTATCAGCTATGATAACTGCACCACCTGCACCTGTGTGGACTCCACAGTGCTCTGCAGGAAGAGATGCTCTCCGCCTGGCAGCTGTCATGGCACTGCCTGCTGCGAAGCCTGCCAGTCTCTCCTCAAGATGGAAGATGTGAAATACTGCAGAGTCAAGAGCAAAATCTATAGGGATGGCGACAGATGGTCGTCTGTGAACTGTTCTCTGTGCACATGCGTTAAAGGGAATATTCAATGTCAGCCTAAGATTTGCGTTCCTATCACCAGCTGTCCCTCGAATAAGATACTGAATCGCACTGGCTGCTGTCCTGTTTGCACTGACAAGCCAGGCGTGTGTACCGTATTTGGAGACCCTCACTATAACACTTTTGATGGCCGTACCTTCAACTTCCAGGGCACGTGTAAATATGTGCTCACCAAGGACTGTTCCCCAGCGGCCAGTTTCACAGTGCTTGTGAAGAACGATGCCCGACGCACACGTTCCTTCTCATGGACCAAATCAGTGGAGCTGCACACGTCCGGTCTGAGCATCAGCCTTCACCAACACCTGACCGTCCGGCAGAACGGCACACGCATCGCTCTTCCCTTTCACAGCACCGGCGTCCACATCGACCTGGATGGATACCTGCTCAAACTCACCACCATCGCAGGACTGGAGATCACGTGGGATGGGGACAGTCTGGTGGAGGTGGTCGCAGCGCCTCATCTGAAGGGGCAGCTGTGTGGTCTTTGTGGAAACTACAACGGTCAGCGGCGAGACGACTCTCTTGGAGGAGACGGACAGTTTAAGTTTGACGTGGATGAACTTGCTGAATCGTGGCGTGTGGAGGACAACGAGCTGTGCGAAGTACAGAACCGCCGGCCCACATCCTTTCTCTGTGCCGGAACAGTCAAGGTGAAGCTCCGCGCTCACAGAACCTGCCAGAAGCTCAAGTCCTGGGAGTTTCAGAAGTGCCACTCTGCTGTCGACTTTACCTCCTTTTACAA
>TCONS_00019406
ATGCTGTGTCTGTCTCCTCCAGTAACCTACAACCTGTTATTCTGGTTTTTAATTCTCCAAACGCCACAATCAACTGCACCTTTAATCACCGGTACAGAGGCTAGCTGTGAAAACGAGGGAGAAGTGTTACACATCCCCAACATCACAGACAACCCCTGCATCTCCTGCGTCTGTCTGAATCAGAAAGCGGAGTGTAAGCAGGAGAAGTGTGCACCGCTGGCAGAGGACTGTGCGCTGGTGGTCAAACAGACGGGAGCCTGCTGTGAAAAATGCAAAGGTTGTCTTCTGAAAGGGACGTCCTACAACAGTTCCCATCACTGGATAAGCCCTGTGAAACCCTGTGTCACGTACAGCTGTCAGGAAGGTGTCATCACTGAAGCAGAGATGAGGTGTGTCATTCACTGTAAGAACCCTAAAATCCACCCCAAGAAATGCTGCCCTACATGTCCAGGGTGCATTTTTGAGGGGAATTTATATAAAGAAGATGAAGAATTTCACCCTGAAGGGAATCCCTGTATTAAATGCGTCTGCACTggAGGGCAAAGCATGTGTCATAAATTGGTGTGTCCTGTTCTGTCCTGCCCGTCTCATCTTACCCACACTCCACCTGGCCAGTGCTGTCCAAGATGTCGGGGTCAGAGGAGGGTGTTTGACTTATCGCCAGGCAGCTGTTTGTTCCATAGTGAGGTTTATGAGAACGGCTCCTCTATCAGCTATGATAACTGCACCACCTGCACCTGTGTGGACTCCACAGTGCTCTGCAGGAAGAGATGCTCTCCGCCTGGCAGCTGTCATGGCACTGCCTGCTGCGAAGCCTGCCAGTCTCTCCTCAAGATGGAAGATGTGAAATACTGCAGAGTCAAGAGCAAAATCTATAGGGATGGCGACAGATGGTCGTCTGTGAACTGTTCTCTGTGCACATGCGTTAAAGGGAATATTCAATGTCAGCCTAAGATTTGCGTTCCTATCACCAGCTGTCCCTCGAATAAGATACTGAATCGCACTGGCTGCTGTCCTGTTTGCACTGACAAGCCAGGCGTGTGTACCGTATTTGGAGACCCTCACTATAACACTTTTGATGGCCGTACCTTCAACTTCCAGGGCACGTGTAAATATGTGCTCACCAAGGACTGTTCCCCAGCGGCCAGTTTCACAGTGCTTGTGAAGAACGATGCCCGACGCACACGTTCCTTCTCATGGACCAAATCAGTGGAGCTGCACACGTCCGGTCTGAGCATCAGCCTTCACCAACACCTGACCGTCCGGCAGAACGGCACACGCATCGCTCTTCCCTTTCACAGCACCGGCGTCCACATCGACCTGGATGGATACCTGCTCAAACTCACCACCATCGCAGGACTGGAGATCACGTGGGATGGGGACAGTCTGGTGGAGGTGGTCGCAGCGCCTCATCTGAAGGGGCAGCTGTGTGGTCTTTGTGGAAACTACAACGGTCAGCGGCGAGACGACTCTCTTGGAGGAGACGGACAGTTTAAGTTTGACGTGGATGAACTTGCTGAATCGTGGCGTGTGGAGGACAACGAGCTGTGCGAAGTACAGAACCGCCGGCCCACATCCTTTCTCTGTGCCGGAACAGTCAAGGTGAAGCTCCGCGCTCACAGAACCTGCCAGAAGCTCAAGTCCTGGGAGTTTCAGAAGTGCCACTCTGCTGTCGACTTTACCTCCTTTTACAAGTCGTGTGTAACAGACATGTGTGAGTGTCCAGTGCATAAGAACTGTTTCTGTGAGTCCTTCATAGCGTtatcaaaaactcgcaagagaaaatcgttacatggacatcgcaaaaataagacctgtgcaaGCACACATTGCAAACACGGCGCAGTTTATGACACATGTGGGCCTGGCTGCACTAAAAGCTGCCATAACTGGAATGAAATCGGACCCTGTCAGAGGCCCTGCATCGCCGGCTGCCACTGTCCCGCCAGCCTGGTCATGTTTCAGGGCCACTGCATTAAACCAACATCCTGCCCCGGGCGATGA

Function

symbol description
bmper Enables extracellular matrix binding activity. Acts upstream of or within several processes, including animal organ development; regulation of BMP signaling pathway; and regulation of angiogenesis. Located in extracellular matrix and extracellular space. Is expressed in several structures, including head; hematopoietic system; mesoderm; nervous system; and pectoral fin. Orthologous to human BMPER (BMP binding endothelial regulator).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0043049 otic placode formation biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0001568 blood vessel development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0014029 neural crest formation biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005515 protein binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030219-146 Enables extracellular matrix binding activity. Acts upstream of or within several processes, including animal organ development; regulation of BMP signaling pathway; and regulation of angiogenesis. Located in extracellular matrix and extracellular space. Is expressed in several structures, including head; hematopoietic system; mesoderm; nervous system; and pectoral fin. Orthologous to human BMPER (BMP binding endothelial regulator).

Ensembl:

ensembl_id ENSDARG00000101980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019405 False 2181 mRNA 0.51 12 7154266 7184855
TCONS_00019406 True 2004 mRNA 0.52 16 7154753 7195000

Neighbor

gene id symbol gene type direction distance location
XLOC_009675 NA coding upstream 35698 7118147 ~ 7118568 (+)
XLOC_009674 bbs9 coding upstream 91317 6957582 ~ 7062949 (+)
XLOC_009673 eaf1 coding upstream 198721 6944311 ~ 6955545 (+)
XLOC_009672 arhgef2 coding upstream 221088 6864244 ~ 6933178 (+)
XLOC_009671 znf236 coding upstream 353634 6750289 ~ 6800632 (+)
XLOC_009677 NA coding downstream 31676 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 coding downstream 32584 7227584 ~ 7294953 (+)
XLOC_009679 sri coding downstream 47610 7242610 ~ 7260345 (+)
XLOC_009680 atg5 coding downstream 185463 7380463 ~ 7416532 (+)
XLOC_009681 NA coding downstream 319850 7514850 ~ 7515507 (+)
XLOC_009668 NA non-coding upstream 732817 6395303 ~ 6421449 (+)
XLOC_009659 NA non-coding upstream 1651567 5499274 ~ 5502699 (+)
XLOC_009654 FO722028.1 non-coding upstream 2279785 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 2442538 4708735 ~ 4711728 (+)
XLOC_009682 CT574585.2 non-coding downstream 369527 7564527 ~ 7566095 (+)
XLOC_009688 NA non-coding downstream 597721 7792721 ~ 7793768 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_00750437_00764088 BMPER coding CI01000065 null 750437 ~ 764297 (+)