XLOC_009678 (CU466278.2)


Basic Information

Item Value
gene id XLOC_009678
gene name CU466278.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7227584 ~ 7294953 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019408
ctgctatggaagtaaatggttacaggtgtacagcatttttcaaaatatcttcttttgtgttcaacggaagatAGAAAgccaaacaggtttgaaacaagtgaaagTCACCGTTTGGTTCAGCTTAGCTGTCAAAACCGACCTTTATAGACTACATCGTTAGTCCGGACTGCTGAACtaatcactggcactacccttcctacactttaagaactgtactcttccagagtgagtaaaagggctcgcaaaatcactctggacgcctcgcacccagcacactacctgttcgaaCTGTTACAATCTGGTCGGCGCTACAGAGCACCAAGCataaaaacagccagacacaggacaagtttctttcctcaggccatctacctcatgaacagttaaatattccccTACTATgtcttaaaaaggtcttaaaaggtattaaatttccTGTTAAAAAATGTGTAGATACCCTGaataaacatgtgcaatactttctcacaTGCgattgtacacagcaccttataacctgtatatttataacaaatctgtacacaCAACTCAACATCCAGATCTTTTGGTcgaactgcatctctgtttaatgtttgtcatctttttttcatatttattttgtgttgtcacttgtcacttcaagtacactggaagcttctgtagcca

Function

GO:

id name namespace
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019408 True 663 lncRNA 0.40 3 7227584 7294953

Neighbor

gene id symbol gene type direction distance location
XLOC_009676 bmper coding upstream 32584 7154266 ~ 7195000 (+)
XLOC_009675 NA coding upstream 109016 7118147 ~ 7118568 (+)
XLOC_009674 bbs9 coding upstream 164635 6957582 ~ 7062949 (+)
XLOC_009673 eaf1 coding upstream 272039 6944311 ~ 6955545 (+)
XLOC_009672 arhgef2 coding upstream 294406 6864244 ~ 6933178 (+)
XLOC_009680 atg5 coding downstream 85510 7380463 ~ 7416532 (+)
XLOC_009681 NA coding downstream 219897 7514850 ~ 7515507 (+)
XLOC_009682 CT574585.2 coding downstream 269574 7564527 ~ 7566095 (+)
XLOC_009683 stx12l coding downstream 331582 7626535 ~ 7641367 (+)
XLOC_009684 popdc3 coding downstream 358952 7653905 ~ 7658707 (+)
XLOC_009668 NA non-coding upstream 806135 6395303 ~ 6421449 (+)
XLOC_009659 NA non-coding upstream 1724885 5499274 ~ 5502699 (+)
XLOC_009654 FO722028.1 non-coding upstream 2353103 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 2515856 4708735 ~ 4711728 (+)
XLOC_009688 NA non-coding downstream 497768 7792721 ~ 7793768 (+)
XLOC_009691 NA non-coding downstream 1060526 8355479 ~ 8372570 (+)
XLOC_009696 NA non-coding downstream 1669936 8964889 ~ 8965839 (+)

Expression


Co-expression Network