XLOC_000969


Basic Information

Item Value
gene id XLOC_000969
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6159631 ~ 6173701 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003320
GCTGGTAGGAATTGCATCATAACAGCAGTGCTTCTTCATAAAGTTCATATAAGTTTCGGCATTTGGATCCAGaaagcttcatttcataAAAAACCGACATACATGGACTTAAAAACTCATCCCACTGGCTCATTTCAACCTTGTCCCCGAGTTTAGTGTCATTACTGTAAGCTGTTTTTCCCTTTATATTAACGGATGACGAAGaacaacatatttattgcacCTAAGCACTGAAAACCACTCCAGGCAAACAGCATCTGACCTTTAAATACACAAatgattaagaaaataaacaGTCTGACAAATATGAGCACTTATTATTCTGATTGAAAATGTTTTTTCCCCTCTGAATATAACTTAAGTCCTAAACTTAATCTTAAACTTAGCCTCCAAAGTATAGTATTTACTCTTATTTAGCTagaccagaagaaaaaaaaaaagtcaatttaaaaatcaaatcagGCCATTATAATACATAGTACAATTGCTTTTAGTTGTAGgaagtatttacatttacaatcaGTTTTCAGAAGCTCCTTAAGCATATCAGGAGCATCAGTGCAACTTAAATCACTTAAATAGTGAATTTAAATAGACAACAGCACTGTACATTCATCCTTCTAAAGTGTCAGCGATGTATTGTCTTAAAGATACAGCAATGGAGGGATTTATACATCATGTGATTCTCTCATAACATACTGAAGTCATTCTAACATATTAAGGTCTCCCACTCATTTTCCACAAagtgaatttataattttatatacatgAGTGGGAAGACTTAATGTGTTATATTGACTTAAATATGGTATACTTGCACTGCaaacatgcttttcttacttagatttcttGTCTTGTTTATGGTCCAAATaactaaaaactcttaaatcaagaagcattttctagacaagcaaataacatcgtcttgttttcagaaataatacgtcaaaattgagtgagttttccttaaaacaagctaaataatctgctaatggtgTAAGCAAAGTAAATGCATGTCAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003320 True 1020 lncRNA 0.32 2 6159631 6173701

Neighbor

gene id symbol gene type direction distance location
XLOC_000968 NA coding downstream 73879 6060026 ~ 6085752 (-)
XLOC_000967 pard3ba coding downstream 130755 5798548 ~ 6028876 (-)
XLOC_000966 nrp2a coding downstream 413601 5606460 ~ 5746030 (-)
XLOC_000965 fn1b coding downstream 616566 5504128 ~ 5543065 (-)
XLOC_000964 mnx2b coding downstream 704129 5449777 ~ 5455502 (-)
XLOC_000970 mdh1b coding upstream 44931 6218632 ~ 6225285 (-)
XLOC_000971 NA coding upstream 224498 6398199 ~ 6400326 (-)
XLOC_000972 klf7a coding upstream 229850 6403551 ~ 6494384 (-)
XLOC_000973 CU571320.1 coding upstream 279703 6453404 ~ 6453519 (-)
XLOC_000974 CABZ01075316.1 coding upstream 968338 7142039 ~ 7142143 (-)
XLOC_000962 NA non-coding downstream 807189 5350872 ~ 5352442 (-)
XLOC_000961 NA non-coding downstream 962910 5195078 ~ 5196721 (-)
XLOC_000960 NA non-coding downstream 1005803 5148593 ~ 5153828 (-)
XLOC_000959 FQ790365.1 non-coding downstream 1081143 5078371 ~ 5078488 (-)
XLOC_000975 NA non-coding upstream 1371348 7545049 ~ 7554339 (-)
XLOC_000980 NA non-coding upstream 1526322 7700023 ~ 7701856 (-)

Expression


Co-expression Network