XLOC_000097


Basic Information

Item Value
gene id XLOC_000097
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8573777 ~ 8575057 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003026
CTGTTTCACCAGCTATCCATCCTGTGTCAGGTAATGATTTAATATATTGACAgggtaaaaataaacatgctttaCTTACAAAAATTCTGGATTTTTGCAGCAGTTAAACTCACTTTTTGGATTGTAATCAGTTTTTAAGATAACATTAATTGCATACATTTATCAGACCACTACTATAACATGACTAAGGGGGGAAATTAAGTGACCAAACATTCTGTTTCTCCAGATTTGTTAGTTATGGCCTtgatttaaagggatggttcactcaaaactgaaagttctgtcatttactcaccctttgtgtttcttctgttgagcaaaaAATATGCTTtcaagaaagctggaaacctgtaaccatttacttccatagtttttatttttcctatGTACTATGGAAGTCTAGTGTTGCatcaatttagcttttttttcctCCAAAATATCTTTAGTATTCAACAGAATTAAGTtagtcataaaggtttgtaaccacttcaGTGTTAGTAAAATGCATAAAAGTAAGTCAGTTGTTTATTTTGGGGGGAATTGTCCCTTAAATTATTCTTTTATAACTTTGGTCCTATTCAACTTCATTCTATTACATTGTTTGGTTACtacttttcaaataaatgttttttttttccaaggaaAGTACAGTTGGTCTGAGTAACACCCAGGTTTTTTTGGGTGTGTCTGAAAAGTGTTATTCCATGGGATATTGATttcttaaactaaaaaaaaaaaaaacatttgtattgtGTAAAATCTAATACAAACATgtcttgaaattaaaaaaaaaaaaaaaaaaagaattgatttACTGAAATGCATAACTACAGGTCTAAATTGTAAACCCAGAGAAACAGTTAAGGGGTCTGTTTTTCCTCCTGGGAAATAATGGTCTGTTTTTCCCCTACATCACTTTTCCAAGCATCTTTTGCAAATTGCTCTGATAGTATGTTTGTCGCAAATTGACTcctttaaaaaatacatacatgctTTTGATAtatccaatttattttatttacagattAACTATGTTATtgataagtgatgtttaacatggAGAGAAGGTAATGCATAGTTGACATTAATtttcattaaagttattttttgtcCCTTTTTCAGAGAGACTCACCAGATATTCGAGATTCTTCACTGCACTTTGCATCTTGGTGAGTGTTggataacatttttatttcaaaaattgACAACAATAGTTGTTGCTTTGACCTAATTTGttctattttctttgtttttcaggtttcttgtgaaaaataaaacaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003026 True 1281 lncRNA 0.31 1 8573777 8575057

Neighbor

gene id symbol gene type direction distance location
XLOC_000096 smcr8b coding upstream 33727 8534698 ~ 8540050 (+)
XLOC_000095 mief2 coding upstream 41768 8521323 ~ 8532009 (+)
XLOC_000094 alkbh5 coding upstream 57182 8508753 ~ 8516595 (+)
XLOC_000093 myo15ab coding upstream 66547 8442071 ~ 8507230 (+)
XLOC_000092 cacna1hb coding upstream 169772 8304904 ~ 8404005 (+)
XLOC_000098 AL928650.2 coding downstream 250 8575307 ~ 8577274 (+)
XLOC_000099 AL928650.4 coding downstream 4140 8579197 ~ 8586066 (+)
XLOC_000100 NA coding downstream 12173 8587230 ~ 8590636 (+)
XLOC_000101 si:ch211-160d14.15 coding downstream 18503 8593560 ~ 8597015 (+)
XLOC_000102 SLC29A4 coding downstream 26878 8601935 ~ 8610564 (+)
XLOC_000087 NA non-coding upstream 899548 7672121 ~ 7674229 (+)
XLOC_000084 NA non-coding upstream 1061015 7512529 ~ 7512762 (+)
XLOC_000082 CABZ01075319.1 non-coding upstream 1457863 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 non-coding upstream 1509834 7063837 ~ 7063943 (+)
XLOC_000080 NA non-coding upstream 1583750 6956913 ~ 6990027 (+)
XLOC_000105 NA non-coding downstream 375817 8950874 ~ 8965939 (+)
XLOC_000106 NA non-coding downstream 392422 8967479 ~ 8976422 (+)
XLOC_000111 NA non-coding downstream 554329 9129386 ~ 9132490 (+)

Expression


Co-expression Network