XLOC_000972 (klf7a)


Basic Information

Item Value
gene id XLOC_000972
gene name klf7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6403551 ~ 6494384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001541
ACAGTAACCTGTGAGCTACCGCGCTCCTGCTGCTCACCTTCTGAGGGAAGAAAACAAACCTGGATGGATGGATCCGTTACTTTCAAATACATTTTAGTGTCCATAGTGAAGTGAAACGTTTCGGGTTTCGTGCTTGATCTGAATGTTTCAGTCGCTCGCGCTGAAGCGTACGCGGATTCCTCGCGCAGAGAATCAAAGTCTCTCAAACGCAACGTTTAGCTCCACAAACATGGATGTTCTGGCCAATTACAGTATTTTTCAAGAACTTCAACTTGTTCATGACACTGGCTACTTCTCCGCGATGCCGTCTCTGGAGGAAAACTGGCAGCAGACATGCCTGGAGCTGGAGCGCTACCTGCAGACAGAACCCAAGCGTCTGTCTGACCTTTTCGACGAGGAGCTGGACGGCCTCCTCAGCCCCTCCTTCATGAAGGAAGACGGAGACGAAGACCTGTTAGACCCTCTCCTTCCCAGCCTCAACAACCCTCCCAGCCCTTCTCAGCGTAAAGAAACCCACTCCTCCATTTCTCCAGATGCCACCTTAGGAGTCAACGCTGCCCAGCTGAATGCCGTCACATCACTAACACCGCCCTCATCTCCAGAACTGGGTCGACATTTAGTCAAACCCACCCATACGCTCAGTGCATCACCCGACGGGACCCTCACGCTCAAGCTTGTGGCCCGAAAGGTGGGCTTGAGCTCTGCCAAGCTTGTGGCGGCTCACCCGGTGCCACTTTCGCCTCAGCATGGTAGCACTGGCACTCAGAGCGATGGGGAACAGGGTGGCACCTGTACTATTGGAGTCGGCGATATGGCGGAGAATAAAAAGAGGGTCCATCGCTGCCAGTTCAACGGCTGTCGGAAGGTCTACACTAAGAGTTCGCATCTGAAGGCACATCAGAGGACACATACAGGGGAGAAGCCGTACAAGTGCTCATGGGAAGGCTGTGAATGGCGGTTCGCAAGAAGTGACGAGTTGACGAGGCACTACCGCAAACACACCGGCGCCAAGCCTTTTAAGTGCAATCACTGCGACAGGTGTTTCTCTCGATCCGATCACTTGGCACTGCACATGAAGAGGCACGtctgaggaggaagaggaggaggcgGGAGGAAGAGACAGAGAGAAGGCCgagggagagaaagagggggATTATGGGAAAGAGCCGAATACCACTCAGGCCGTTGGCTCATCCCACTGGAGGGAGACCCCGGTGTGGAAACAACCAGCAAGAGCTGAACTTACACCAGGTCTTGAGGTTTGATCGGCGAGATGCAAGTCACATCTGACCATGAGGATGTACATTCTGCGGTCTACAGATCTGAGAAGGTGTTATGACAGCTCATGTCAATGTGCTTCAGTTGGTACTCACAACATCAATGACTTGATTTAGTTACGAATAATGCGCTCTCCAAGACCCATTAAAGATTTTGCCAATGTTACTTAGACATCTTGCGCATATTGTCACAGACAAAAGCTATTGTTGCTCCAGATTTAATTTGCTGCACCGTGCAGGACGTGAATGCATCTCCTTTGGAGAATATCGTAGCGATAGGACGTCAATCCAAAGAGatggatttttgtttgtttgtttcattttgagcAAGGATTATCCTTCTGCTTTGATCCCGCCAAGATCTAAAGTGGAATGTCCATCTGGAGAAATCTGGATTTCAAAAGGCGACCAAGATGAATCGCTTTTATATGTGTATTTGACCGGAGGAGTGAAAGAAACGCTCTTACCTTCTTCATAGATGGACAAATCTCTCTCTTTCACATCCCTCCCtgccaactaaccaaccaaccgcTGCGCAGCGACACTTTGAGactttttataaagaaaaaaaaatcaaggaagAGATCTTTTTGAATGATGACTATGTTATATAATTCAGAAGActtctttttttgcttttctcCTGTGGATGTGtacaaaatagaaaaagaaacaaaaatggaccaaaaaagaaagaaaaactgcCATATGCACAAGCGAAAAGTAGTGGATTCTACACTGGCACAGACCGCATCTGAGGTGGACTTCATTTCTTTAGAAACGCAAACTTTTAgtggcaaaaaagaaaaaaagaaaaaagcaatgtTGTTGTTGCACACGTTTTGAGCATTCCTCAACATTATTTATAACCCATGAAATGTTCCCCCATAAACTTGGGTTTCTTCGGGATTTCTAGGACTAGCATGAAATGAGAAAAGCACCATGGTTTATCTGCGGACTTCACAACAAAATAATGACTTCCACCATTCAAGGCAAGATTTGCGATCAGAAAAGTTTAGGTTGTGTAGTACGTCCCGAAAAACTGTCCGGACAGACACTTCCCATCTGTTATTTTAGTTTGGATGGTACAAAGCatcataaattgaaaaaaaaaaatagtgtgcgTTTTGTGTTTCGCTGGTCCTATAGGTGGCATCTACATGTTTAGGCTTTGTAATGGGCTTTTTCTTACACATTACATATCTGTCTGCTTAGTGTTCCCGGTAAAAACAACTGtacagtgtgaaaaaaaaaatgtatagtaaaAGTGAGGTTTAAATTACAGCGTACAATCAAGTGTGGGATGTGAATGTAAGGTTGGATGATTGTGGACGGCCCTGCACTTATGCAATCATTGCTCACGATAGATCCTACTGTGGCTCATGCATAAAGATCTACACAAAGGCTCGTTGATGAAGGAATAACGCACATAAAATGAACAATCTgccattgtttactcaccctcgtgtCGCTCCAAACCTTCTTTCTTCAGTGCAAGACAAAagacgttttgaagaatgatgtctCTTTTTTTCCTACAATCAAAAACAATGGGGGATTTCAAAGTCTGACAATTGGCATTAAAGCACTAAGATAaagtaaatgtgaaaatattccaAATTTAACTTCATTTTAACGTCCACATATTCAAACTTGACACAATtccaaaaaatacacaaaaca

Function

symbol description
klf7a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain and olfactory system. Orthologous to human KLF7 (Kruppel like factor 7).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-276 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain and olfactory system. Orthologous to human KLF7 (Kruppel like factor 7).

Ensembl:

ensembl_id ENSDARG00000073857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001541 True 2960 mRNA 0.45 4 6403551 6494384

Neighbor

gene id symbol gene type direction distance location
XLOC_000971 NA coding downstream 3225 6398199 ~ 6400326 (-)
XLOC_000970 mdh1b coding downstream 178266 6218632 ~ 6225285 (-)
XLOC_000969 NA coding downstream 229850 6159631 ~ 6173701 (-)
XLOC_000968 NA coding downstream 317799 6060026 ~ 6085752 (-)
XLOC_000967 pard3ba coding downstream 374675 5798548 ~ 6028876 (-)
XLOC_000974 CABZ01075316.1 coding upstream 647655 7142039 ~ 7142143 (-)
XLOC_000975 NA coding upstream 1050665 7545049 ~ 7554339 (-)
XLOC_000976 mxa coding upstream 1067932 7562316 ~ 7570181 (-)
XLOC_000977 mxb coding upstream 1079967 7574351 ~ 7603734 (-)
XLOC_000978 efnb2b coding upstream 1137735 7632119 ~ 7659870 (-)
XLOC_000962 NA non-coding downstream 1051109 5350872 ~ 5352442 (-)
XLOC_000961 NA non-coding downstream 1206830 5195078 ~ 5196721 (-)
XLOC_000980 NA non-coding upstream 1205639 7700023 ~ 7701856 (-)
XLOC_000981 BX908756.3 non-coding upstream 1277173 7771557 ~ 7844362 (-)
XLOC_000982 BX908756.2 non-coding upstream 1307147 7801531 ~ 7801646 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_03341031_03366645 KLF7, KLF7A, KLF7B coding CI01000299 null 3340766 ~ 3366728 (-)
bowfin (Amia calva) AMCG00000712 NA coding CM030137.1 CM030137.1 1413795 ~ 1422116 (+)