XLOC_000978 (efnb2b)


Basic Information

Item Value
gene id XLOC_000978
gene name efnb2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7632119 ~ 7659870 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001549
GGAGTTCTTAAGAGGGAAGGACTATCACATCATCTCCACCTCTAACAGCACTTTTGAAGGACTGGACAACCACCATGGTGGCGTTTGCAGGAGCAAATCCATGAAGCTGGTTTTGCGGGTTGGCCAGAGTCCTACAGATTCATTCTCAGCGAAAAACCATCCCACAAGAAATCCTCCAAAATACCCTGAAAATAAGGACCAAAATACCTTCAGCAAAGAAAATGATGTCAGTCAGATTGACTCCATGCAGAACGGAGAATCCGGAGGGAAGAGTGGCGAGTCTGTGGGATCTGCTGGGTCTGATGTGGCCCTGTTTGCAGGCGTCGCATCCGGGGCTGTGAtcttcatcctcatcatcatcgcACTTGTAGCACTTCTGCATCGGCGTCATCAGAAGCACTCGGCGCAGTGCTCCGGACAGCTGCCCTTAAACACGCTGCCCAAACGTGGCAGTGGTGCCAGTGGCGGCAGCAACAACAACGGCTCCGAGCCCAGCGACATCATCTTTCCTATCCGGACCTCAGGAAGCATGTACTGCCCGCATTACGAGAAGGTCTGTGGATTATTGAACGTTTATGCACGAGGCCTTGATTCCCGCACCGTGTGACTTCAGGTTGATCATATGGACATCTGCATCCCGAAAGCTGGCCTGACGGATGCGTATTGCATATCAGACATTTGTAGCCCTTATGCTGTTGACGTGCGAGCCGGTGTGGTCGAAAACGCATGTGGTTCTTTTATCCCCATTTTGCTTATAACTTCtcaaacatttattcaaacagcaaacaaacaaaactaaagatCAACATGCAGAG
>TCONS_00001550
GAGTTTCAGAGCGACGCTGCCATTCCGCGGAGCCTGCGCTTTTTAACTGTTTACATATGAAGGATGCGTGTTGAGACATATTAATGCCAAAAGAACCTGTTTACATGGATTATCACCCGTTGTCCGGCTGTTGTGTTAAATTGACTTTATAGATTGCCAGTTGCGAAGGAGCTCTTATTTTATGATTACGTTTTATCCTGCAGATGAGAGCGACTAACAGCATCGGATTGTGCTCGTTTTAGTGCCTGCGGAGCTCTCACTTCTAATCAGATTCGGACTGCTGAACTGTTTCTCCATCGCAATGGATGCGACTGTCTGGAGTTATATATTTGGTCTCTTCGTGTTCGCTTGTCGGGTAAAACTGACTCGATCAACAGTTTTAGAATCAATATATTGGAATACTTCCAACACCAAGTTTGTCCCAGGAAGAGGTGTAGTATTATACCCTCAGATCGGAGACAAAATGGACATTGTGTGTCCAAGAATCAAGCCAGGCTCCACTGAGCAGACGAACATTGAATACTTCCGGGTCTATCTTGTTCCCAAAGAACAACTCGAGACCTGCCATGTTACTAAAAGCGACATGTTACTGCTCAACTGTGACAAGCCGGACCAGGACGTCAAATTCACCTTCAAGTTTCAAGAGTTCAGCCCCAACCTGTGGGGCCTGGAGTTCTTAAGAGGGAAGGACTATCACATCATCTCCACCTCTAACAGCACTTTTGAAGGACTGGACAACCACCATGGTGGCGTTTGCAGGAGCAAATCCATGAAGCTGGTTTTGCGGGTTGGCCAGAGTCCTACAGATTCATTCTCAGCGAAAAACCATCCCACAAGAAATCCTCCAAAATACCCTGAAAATAAGGACCAAAATACCTTCAGCAAAGAAAATGATGTCAGTCAGATTGACTCCATGCAGAACGGAGAATCCGGAGGGAAGAGTGGCGAGTCTGTGGGATCTGCTGGGTCTGATGTGGCCCTGTTTGCAGGCGTCGCATCCGGGGCTGTGAtcttcatcctcatcatcatcgcACTTGTAGCACTTCTGCATCGGCGTCATCAGAAGCACTCGGCGCAGTGCTCCGGACAGCTGCCCTTAAACACGCTGCCCAAACGTGGCAGTGGTGCCAGTGGCGGCAGCAACAACAACGGCTCCGAGCCCAGCGACATCATCTTTCCTATCCGGACCTCAGGAAGCATGTACTGCCCGCATTACGAGAAGGTTAGCGGAGACTACGGACACCCCGTGTACATCGTCCAAGAAATGCCACCGCAGAATCCGGCAAATATTTACTACAAGGTTTGACGGAGCGTGGACAGTAAACCACGGACACTGAAAGGCCAATAGAGGCTGCTCCAAATGA
>TCONS_00001551
TGAGCATttcaaagaaaaactaaataaacacacTTAAAACTATTAGGCAGGTTTGGTTTATTAgacaatatttaatattcaagTGTATATCAAGAATATTCAATGgaactaataatactgacctcaaaatatacacttttatttattaaaatatacacaaatttaaCTACTTtgattccagccaaactaaaagaaataagactttctacagaagaaaaaaaaatgtattaggaaatactgttaaaaatctccttgctctgttcaacatcactgGGGAGATATGTGGAAAAAAAACTTACCATTTCTTATAAATTTGCCTTGAAGTGTTTATTAAGCAGGCatgtttatattttcaaaaatgttattgcaTTTGTGAAGAAAATggctgaatattttttctttccatCTTTTAGCCACCTCTAACAGCACTTTTGAAGGACTGGACAACCACCATGGTGGCGTTTGCAGGAGCAAATCCATGAAGCTGGTTTTGCGGGTTGGCCAGAGTCCTACAGATTCATTCTCAGCGAAAAACCATCCCACAAGAAATCCTCCAAAATACCCTGAAAATAAGGACCAAAATACCTTCAGCAAAGAAAATGATGTCAGTCAGATTGACTCCATGCAGAACGGAGAATCCGGAGGGAAGAGTGGCGAGTCTGTGGGATCTGCTGGGTCTGATGTGGCCCTGTTTGCAGGCGTCGCATCCGGGGCTGTG
>TCONS_00002907
CACCCGTTGTCCGGCTGTTGTGTTAAATTGACTTTATAGATTGCCAGTTGCGAAGGAGCTCTTATTTTATGATTACGTTTTATCCTGCAGATGAGAGCGACTAACAGCATCGGATTGTGCTCGTTTTAGTGCCTGCGGAGCTCTCACTTCTAATCAGATTCGGACTGCTGAACTGTTTCTCCATCGCAATGGATGCGACTGTCTGGAGTTATATATTTGGTCTCTTCGTGTTCGCTTGTCGGGTAAAACTGACTCGATCAACAGTTTTAGAATCAATATATTGGAATACTTCCAACACCAAGTAAGTACACTCAAAGGAGTAAACCGAAAACGGagaattttgacattatttcttcaACACCAATGTTACTCAGTACTGTTTTTTTACTtgctacactttaaaaatatattgtgtatgtTTTACTTGAAAAATTGAGGCAACTATTTCCATCAGCCTGTTCAGTAtttcaaactcattttagctTGTTCTATAGACTGCCACTTTCAAGTAACATCAACTTAATTTGATCAACTTGTAGTTTTCAGTTCGTCAAACc

Function

symbol description
efnb2b Predicted to enable ephrin receptor binding activity. Acts upstream of or within Kupffer's vesicle development and blood vessel development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in margin. Orthologous to human EFNB2 (ephrin B2).

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010618-1 Predicted to enable ephrin receptor binding activity. Acts upstream of or within Kupffer's vesicle development and blood vessel development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in margin. Orthologous to human EFNB2 (ephrin B2).

Ensembl:

ensembl_id ENSDARG00000074050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001549 False 815 processed_transcript 0.50 5 7632119 7650072
TCONS_00001550 False 1364 mRNA 0.49 5 7634458 7659870
TCONS_00001551 False 718 lncRNA 0.37 3 7634813 7637680
TCONS_00002907 True 557 lncRNA 0.38 1 7659201 7659757

Neighbor

gene id symbol gene type direction distance location
XLOC_000977 mxb coding downstream 28385 7574351 ~ 7603734 (-)
XLOC_000976 mxa coding downstream 61938 7562316 ~ 7570181 (-)
XLOC_000975 NA coding downstream 77780 7545049 ~ 7554339 (-)
XLOC_000974 CABZ01075316.1 coding downstream 489976 7142039 ~ 7142143 (-)
XLOC_000972 klf7a coding downstream 1137735 6403551 ~ 6494384 (-)
XLOC_000979 arglu1b coding upstream 2221 7662091 ~ 7673376 (-)
XLOC_000980 NA coding upstream 40153 7700023 ~ 7701856 (-)
XLOC_000981 BX908756.3 coding upstream 111687 7771557 ~ 7844362 (-)
XLOC_000982 BX908756.2 coding upstream 141661 7801531 ~ 7801646 (-)
XLOC_000983 radil coding upstream 187917 7847787 ~ 7894255 (-)
XLOC_000973 CU571320.1 non-coding downstream 1178600 6453404 ~ 6453519 (-)
XLOC_000971 NA non-coding downstream 1231793 6398199 ~ 6400326 (-)
XLOC_000969 NA non-coding downstream 1458418 6159631 ~ 6173701 (-)
XLOC_000985 CR855320.6 non-coding upstream 260249 7920119 ~ 7920206 (-)
XLOC_000996 NA non-coding upstream 542520 8202390 ~ 8205228 (-)

Expression


Co-expression Network