Gene
RNA
| Item | Value |
|---|---|
| gene id | G223807 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000052 |
| NCBI id | null |
| chromosome length | 3494004 |
| location | 2315719 ~ 2320596 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU253867 | False | 679 | lncRNA | 0.51 | 5 | 2315719 | 2319989 |
| TU253865 | True | 776 | lncRNA | 0.48 | 2 | 2319661 | 2320596 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000052_02310477_02312424 | LHFPL5B, LHFPL5, LHFPL5A | coding | upstream | 2812 | 2309879 ~ 2312907 (+) |
| CI01000052_02182830_02186951 | NA | coding | upstream | 128541 | 2181940 ~ 2187178 (+) |
| CI01000052_02167466_02172193 | ADORA1, ADORA1B | coding | upstream | 142683 | 2166584 ~ 2173036 (+) |
| CI01000052_02120654_02122805 | NA | coding | upstream | 192459 | 2120360 ~ 2123260 (+) |
| CI01000052_02077422_02080093 | PROK1 | coding | upstream | 235384 | 2077422 ~ 2080335 (+) |
| CI01000052_02374792_02389760 | NA | coding | downstream | 54116 | 2374712 ~ 2390103 (+) |
| CI01000052_02397395_02408461 | MGC78985, NCS1A, NCS1B, NCS1.L, NCS1 | coding | downstream | 76799 | 2397395 ~ 2408539 (+) |
| CI01000052_02417407_02438433 | HMCN2 | coding | downstream | 96776 | 2417372 ~ 2438924 (+) |
| CI01000052_02439580_02463549 | HMCN2 | coding | downstream | 118984 | 2439580 ~ 2465673 (+) |
| CI01000052_02468269_02501109 | HMCN2 | coding | downstream | 147673 | 2468269 ~ 2501174 (+) |
| G223829 | NA | non-coding | upstream | 17858 | 2297629 ~ 2297861 (+) |
| G223828 | NA | non-coding | upstream | 20409 | 2294958 ~ 2295310 (+) |
| G223825 | NA | non-coding | upstream | 27163 | 2262794 ~ 2288556 (+) |
| G223775 | NA | non-coding | upstream | 133926 | 2181584 ~ 2181793 (+) |
| G223773 | NA | non-coding | upstream | 139912 | 2175027 ~ 2175807 (+) |
| G223834 | NA | non-coding | downstream | 5987 | 2326583 ~ 2326818 (+) |
| G223843 | NA | non-coding | downstream | 40448 | 2361044 ~ 2361448 (+) |
| G223801 | NA | non-coding | downstream | 51105 | 2371701 ~ 2371846 (+) |
| G223806 | NA | non-coding | downstream | 90712 | 2411308 ~ 2414717 (+) |
| G223808 | NA | non-coding | downstream | 94571 | 2415167 ~ 2415889 (+) |
| G223694 | NA | other | upstream | 211420 | 2049326 ~ 2104299 (+) |
| G223545 | NA | other | upstream | 1044792 | 1270492 ~ 1270927 (+) |
| G224953 | NA | other | downstream | 1110540 | 3431136 ~ 3460136 (+) |
