CI01000053_02390840_02400630 (WBSCR17)


Basic Information

Item Value
gene id CI01000053_02390840_02400630
gene name WBSCR17
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2390491 ~ 2401108 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_02390840_02400630.mRNA
ATAACCATAATCGTTTCGATTCGAAAGTTTAAGTCAATTAATCAATTAATCATTCTTCTAACATGGCGCTTATATGACCATAGAGAGACGGCGGAGTGATATAATTAAGACAAAAGTAGCACCGGCATATATGATTGTTTCGTGGTCAGTTTTACATAGTTACACTACAGTGGCCATTATTTAGAGATATTTAACCGCTGAATACCGCGATTGACCAATTAGAATCAAGTAGGCCTATTCCAGAGAATGTAATGAAATAATGAAATATATACATACCTAATAGTGAAAATATTTGTCTACATATGGGCAGTGTGAGTGCTTGCCATGCCTCTTGGTAGACCTAGGTTTGAGTCAAGCCCAGGTCATTTTTCTATTCTAGTCCCATCCGTCTCCTGTTGATTTCCTGTCTCTTCTACTGTGTATATCAATAAAATAGACCATCAGTTCAGTGAACATCACAAGTTAAATTGTGTATGAAATGTCTTCCAAGATGCGATTCGCTGGATTCCGAACACCAAAATCTTTCATGGCCTTTGTGATGAGAAGATGGAAAATCTTACTGGTGCTGAATGTGTTTACGGTGGCTGGCTTCATCACTTTTTGGGGCAAGTGCAATTTACGCACAACCAAAGCTGTTGGTCAACAGGCGGCTGCTGATGCGAGAGGACAGACACATCTGAACGGATCTGCTCAGGAGACAAGCATCACTCATGATGTGCTCTTGAAAAGACTGGGATCACTGGAAGATGTGGTGTACAGACAACTGAATGGCTTGTCCAATTCTCTTGGACTCATCGAAGGTTTTGGAGGCCGAGGTAGAGGAGGTATACCGGCCACACTTACACCGGCAGAAGAAAAGGAGGCTAAATACCTGAGGGAGAAATACGGCTACAATGCATTCCTGAGTGACAAAATCTCTCTGGATAGATCTATTCCAGATTATCGGCCCAGCAAATGCAAAAAGGCCTTTTATCCCCATGACCTGCCACAGATTTCCATTATCTTCATCTTCGTAAATGAGGCGTTGTCCGTCATCCTGCGTTCGGTCCATTCAGCTGTCAACCACACACCCGCTCATCTTCTAAAGGAGATCATCTTGGTGGATGACAACAGTGATGATGTGTGTGCTCAGGCCTTCCCAGAGAGACAGTTCAATTTCCATCACATTGTTGGCATGAGCCGGTGGCGGAGGGCCAACCGTCCATCAGCGCAGGGGGAAAAGCCTGCATTTGCTGAAACGAGGGGGCAGGCGAGCAGCACACCCATTTCTGTCCTCATAATGTCAGTGATTCACGGTTTGTCACTCGGAATGCAGATGACAGTGTTTAACGTGGGGAAAGGGAACACTTTCCAAGAACGTGTTTTCCAGGGGGATGTGCAACTGAAAGAGCCACTGGAGGAGTATGTCAACAAGCGCTACCCGGGTCTTATCAAAATAGTGCGCAATCAGAAGAGAGAGGGCCTCATCCGTGCTCGCATCGAGGGCTGGAAAGTGGCCACTGGGGAGGTGACTGGCTTCTTTGATGCCCATGTTGAGTTCACGCCTGCATGGGCTGAACCAGTTCTGTCTAGAATCAAGGAGAACCACAAGAGGATCATCCTGCCATCCATAGATAACATTAAAGACGAGACGTTTGAGCTGGAACGCTATGAGAACTCAGGTCACGGCTATAACTGGGAGCTCTGGTGTATGTACATTAGCCCACCGAAACAGTGGTGGGATGAGGGGGACACTTCTGCACCTATCAGGACGCCTGCAATGATAGGCTGCTCTTTTGTGGTAAACCGGGAATACTTCGGGGAGCTGGGCCTACTGGACGCTGGGATGGACGTGTATGGAGGCGAAAATATAGAGCTGGGAATCAGGGTTTGGCTGTGTGGGGGCAGCATGGAAGTTCTGCCCTGTTCCAGAGTGGCACATATTGCTAGAACAAAAAAGCCCTACCACAGTAACATCGCCTTTCACACTAGACGCAATGCTCTTCGAGTGGCAGAAGTCTGGATGGACCAATACAAATCGAATGTGTATTTGGCATGGAACCTCCCGATGAAGAACCATGGTATTGACTTTGGAGACATATCCCAGAGACTAGAGCTCAGGAAAAAACTCCAATGCAAAAGCTTTGAGTGGTATCTTGACAATATCTATCCAGAGATGAGGAGATACAACAACACTCTCTTTTATGGAGAAATTCGCAATACCAATGTGACCCATCTGTGTGTGGACCAGGGCATAAAGGAAAACCACACAGCAACTCTGCATCCCTGCCATGGCTGGGGTCCTCAGCTGGGTCGCTACACTAAGGAGGGTTATCTTTTCCTGGGTCCTCTGGGAAGCACTGGCGAAGATACTCGGTGTGTGGTGGATGATAAAATCAGCAACTACCCACAGCTCCTGAACTGTGAGAAAGTCTCTAGCGTACGCCAGAAAACTTGGCACTTTGCACAGAATGAATCAATCATCAACCGAGCTACAGGACGCTGTCTCGAGGTAGTACCAGCTAATGTCTACTTTGGCTATGCTCTGATCCTGCGTTCGTGCACTGGCCAGAAGTGGAACATCAAGAATTTAATGAAACAGGACCAAGGGCATTCCCACTGTAAGTGGCTATGGATCCCAGTCTGCTTTCTGTTTTAATAAGCTGTCTGCTCTGGAAATATGTTATTTATCGCATATTTGTATACAGTAACCCTTGACAAGAATGGCATTATGATATGTGCACAGTTTAATAGTAACTATGGTAACTGAGCTCTATCTTCTGCTGAATGGTTCCTGTAGTAGTCATACCGGTATTTTGAACCATACTCTAAAGCAACAAGGCCAGTATGTAGGCGAAGGGAATATGGGAAAATGATCGGCAGGGATTGTCGACCAAGTTACACAAGAACACTTTAAATGAGTGATAAACTGTACATGTAACTACATTTTCCTTAGATGTTGTTGCACCCATACGTCTTCCATTTTGAATAGGACTGATTTGAATAAA

Function

GO:

id name namespace
GO:0008921 lipopolysaccharide-1,6-galactosyltransferase activity molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_02390840_02400630.mRNA True 2987 mRNA 0.46 13 2390491 2401108

Neighbor

gene id symbol gene type direction distance location
CI01000053_02241056_02246083 GDPD1 coding downstream 144190 2240563 ~ 2246301 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 coding downstream 164010 2225210 ~ 2226481 (-)
CI01000053_02145248_02149126 NA coding downstream 241110 2145178 ~ 2149381 (-)
CI01000053_02122241_02132642 CLPTM1 coding downstream 257704 2121629 ~ 2132787 (-)
CI01000053_02109802_02117454 NA coding downstream 272534 2109171 ~ 2117957 (-)
CI01000053_02427507_02435639 FLOT2A, FLT2, FLOT2B, FLOT2 coding upstream 26399 2427507 ~ 2435639 (-)
CI01000053_02449164_02455151 NA coding upstream 47908 2449016 ~ 2455151 (-)
CI01000053_02486308_02487685 NA coding upstream 84325 2485144 ~ 2488030 (-)
CI01000053_02497603_02508436 NA coding upstream 96482 2497590 ~ 2508723 (-)
CI01000053_02533620_02536887 NA coding upstream 132485 2533593 ~ 2537840 (-)
G226719 NA non-coding downstream 68440 2321795 ~ 2322051 (-)
G226545 NA non-coding downstream 186223 2201825 ~ 2204268 (-)
G226661 NA non-coding downstream 238842 2151329 ~ 2151649 (-)
G226530 NA non-coding downstream 248021 2139542 ~ 2142470 (-)
G226660 NA non-coding downstream 251500 2138568 ~ 2138991 (-)
G226829 NA non-coding upstream 159802 2560910 ~ 2563363 (-)
G226833 NA non-coding upstream 166365 2567473 ~ 2567729 (-)
G226834 NA non-coding upstream 167577 2568685 ~ 2568928 (-)
G226862 NA non-coding upstream 192212 2593320 ~ 2595466 (-)
G225812 NA other downstream 923759 1459595 ~ 1466732 (-)
G225574 NA other downstream 1843623 543647 ~ 546868 (-)
G226826 NA other upstream 164784 2565892 ~ 2567072 (-)
G226963 NA other upstream 595609 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 1149225 3550333 ~ 3552847 (-)
G227604 NA other upstream 1686129 4087237 ~ 4087740 (-)
G228651 NA other upstream 3383375 5784483 ~ 5787690 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location