G229464


Basic Information

Item Value
gene id G229464
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6774347 ~ 6774826 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU260399
CACCAAATTCCACTAGCCTTACATGCTCTCAACCAGTTCTCTAAAGCCTCTGAGTTATATTTGAACCTAAAAAATGTGAAATGTTAGCATTACATAATTTCCCTTCACAGTCATTATTTAATATACAAATCAAGAGGGAAGTTAAATATTTGGGGATTATTATTTCTAAAGATAGAGGAATAATGGAGAATAAAAATGTGTTGAATAACATAGATAAATGTAAATCTATACTAAATAGATGGCTGCAGAGGGATCTTTCAATCTTTGGAAGAGTTCTTTTGTCTAAAATGGATAGTTTGTCCAGATTAATCTACCCAGCCTTCTCCTTGCCCATATCGACATGAATGATTAAATTAATAAATAAGGTGAATTTCAAATTTATTTGGAGGAATAAATGTCACTACATAAGAAAGGATGATATTATTAAAAATTATGAAGATGGCAGTGTGAATGCGATCGATTTTGACATTATGAATGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU260399 True 480 lncRNA 0.31 1 6774347 6774826

Neighbor

gene id symbol gene type direction distance location
CI01000053_06662264_06720098 SLC15A4 coding downstream 53685 6661586 ~ 6720662 (-)
CI01000053_06308157_06310323 NA coding downstream 463881 6307318 ~ 6310466 (-)
CI01000053_06287804_06296687 NA coding downstream 477660 6287214 ~ 6296687 (-)
CI01000053_06162569_06179766 GOLGA1 coding downstream 594245 6162079 ~ 6180102 (-)
CI01000053_06060129_06071679 RNF10 coding downstream 702668 6059609 ~ 6071679 (-)
CI01000053_06777287_06806952 NA coding upstream 2416 6777242 ~ 6806952 (-)
CI01000053_06829449_06831635 NA coding upstream 53947 6828773 ~ 6831635 (-)
CI01000053_06881417_06887257 NA coding upstream 105869 6880695 ~ 6887369 (-)
CI01000053_06918860_06919124 NA coding upstream 143792 6918618 ~ 6919124 (-)
CI01000053_06923962_06924261 NA coding upstream 147981 6922807 ~ 6924261 (-)
G229459 NA non-coding downstream 7490 6765630 ~ 6766857 (-)
G229423 NA non-coding downstream 49847 6723224 ~ 6724500 (-)
G229236 NA non-coding downstream 539553 6234514 ~ 6234794 (-)
G229235 NA non-coding downstream 541186 6232905 ~ 6233161 (-)
G229465 NA non-coding upstream 4 6774830 ~ 6775086 (-)
G229471 NA non-coding upstream 4494 6779320 ~ 6779632 (-)
G229462 NA non-coding upstream 47839 6822665 ~ 6823423 (-)
G229502 NA non-coding upstream 62195 6837021 ~ 6837304 (-)
G229504 NA non-coding upstream 65228 6840054 ~ 6840457 (-)
G228750 NA other downstream 842106 5931592 ~ 5932241 (-)
G228651 NA other downstream 986657 5784483 ~ 5787690 (-)
G227604 NA other downstream 2686607 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 3221376 3550333 ~ 3552847 (-)
G226963 NA other downstream 3777079 2996717 ~ 2997268 (-)

Expression


Co-expression Network