XLOC_000997 (syngr3b)


Basic Information

Item Value
gene id XLOC_000997
gene name syngr3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8415983 ~ 8428761 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001579
GCGGCGCTCTTCCGCAGAATCAGATCCTTGCACACAGCCGCAGCACCGGGAGGATGGATGGAGCGGGCTCGTTTGGAGCGGGCCGAGCCGGTTCGGCCTTTGATCTGGTTGCGTTCGTCAAACAACCACAGACAATCCTAAGAGCGTTGGCATGGATTTTCTCCATGGTGGTCTTTGCGTCTATAATAAATGAGGGCTATGTGAATATGGGTAGCGAGCGGCTGCATTGTGTGTTTAACAAGAACGCAGATGCCTGTAACTACGCCATAACTATAGGAATTATGGCGTTCTTAGCAAGCGTCTTGTTTCTGGCCCTGGACGTCTACTTTCCTCAGATCAGCAGCGTCAAAGATAGAAAGAGAGCAGTGCTGCTGGAGATTGCTTTTTCAGgaTTCTGGACGTTCCTTTGGTTTGTAGGATTCTGCTTTTTGGCCAATCAGTGGAGTCGTACGTCTGATAAGGAGCTTCCTCTGGAACAGGCTTCAGACGCTGCACGAGCTGCTATTGCTTTCTCTTTCTTCTCCATCCTGACCTGGGCGGGGCTCACGGTGTGTGCAGTTCAGCGGTTCCTGCTGGGCACCGACATGACCCTGTTCACCAGCGAGCAAGTGGTCAACCAGCCACCCAAGCAGACGTACCCATCCAATGATGTCATCGGTCAGACCACCATCCCCGTCAATGCCTACCAGAGTCCACCGCTCATCGAAACTGTGGAGACCCGGCCACCTGGATACAAGGTCCCACCTGCGTTTTAATccacagccaatcagaagcagCGCTGAAGGACAGAGTATAGAGTGCCGTCAATGTTAGCTAAATGTATTGTATTGCATTTTAGTAGTGAGGAGGCGAGGGGAAGATGCTCAGCTCTGTAGTACAATACTCACTATTATACACGATCCAACCATTATGTAATCTCACCTTTACTAATGTTACGGGACAGTGATTGATTGCCATCGCCTGCTCGAAATATTTACATCATCCAAATTTAGTCAGAAAAGCATTTACACGTCTTATTTATGCAAGGTAATTAAATAAAGGCACACTTACTATGGACGCTGTTGGTATGGACGCATTTTTCACTGAAAACTGAGAGAAAATGTGACGAGTAACAATAATACTGAAAATACTGAAATCTTTTTTAGTGTTTTCATTGAGTATTCTGGCTTAGAAACTTATAAATTATAGTTAAACTATAAATGGTATTACATTCTGAAGCAGTAAGAACATCTCAACTTCTCAAACATTTTTACTGGCAAACATCTTCATGACTAAACAAGGAAACTGCGagttaagttaaattaaacataattttttttttgtagaaagaTTGACATCATTTTACTGTGTCACTAAAAAAAGACCAAAGTTTTATCTAAAAACGACaagtaacattaaaataatggtgatattttaaagtgaaaaaactgaaatcTTTTTAGTTCTGTCACTGAATGTTCTGGTAACTTACAAATTAtatcaattataataaaattcaatTTTGAAGCAGAAAGACAGTCTTTTCTTCTCACACATTGTCACTACGAAACATTTGCCCGATTAAACAAGGAAACTGCaaggtaaattaaattaaacctgATTTCTTTCAAACAGAAAGATGGATTTTTACtgtgttcactgtaaaaaaaagacaaaaattttaCTTAATAATGTCAAGTGACATTGAAATAATGGTGatattttaaaggggaaaaaaaaaactgaaatcttGTCTTCTCATACAAATGGTTACATTCCTgttacatatttttttctaggAAACATTTTCAAGATTGAAattaaacctgattttttttaaagtagaagATTGACATTATTATTCTGTTTTCACTGAAGATTTCACTTTAAAATATCACCATTATTTTTATGTTACTTGTAGTTTTTAAGTGAAACAATGAAATATTTTAGTGTTTTCACTGCGTTATCTGGCATAGAAACTTACAAATTATATTCAATGTTGAAGcagaaaaactgtttttttttcttgttgcacATTttcactagcaaaaaaaaaactcacaaagtgACAACAAATGGACTTAAAACATAGATATACAAAACACTCTcttctaaataaacaaattaataaataaatgaatgaaagaatgaatgattgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaataaataaataaatgatcaatctCTTCAAGTGTCCAGCCTGATTTAGTGTCAGATAGTTAAGTGGTCCAGTAAGCTGACTGGATGTCACTAGCCAATCTGGAGGCTGTATAGAAACTTATAAATGATATGAgtgataattaaattataaatgacaTTACATTTTGAAGCAGAATGACAGCTTTCTcttctaaaaacatttttactagGAAACGTTTACACAATTCAGAAAATCGCAAACAACATCATTAATTgaacatgatttttttaaagtagaaaGATTAACAGCGTTCTACTGTTCACTGAAAAAACACAAAGGTTTCACTTTAAAAGATCGCCATCATTTCAATGTTAGTTGTAGTTTTCATGTGAAACTTTAAAAGTAAACTGAATAATCCGGCATATAAATTACatgaattataattaaaatacaaaaaatgttttactcgTCACATTTTCACTAGGAAACatgaaaataaacatgattttttaaaGTAGAAATATTGATTGAAAAAACAAGTTTCACCTAAAAACTAAAAGTGTTATTGAATTAGACATGAAATGTATAGAAAGACTGAAACTGTATTTTATTCTTAAACATATTCCAACactctttgttttatttacaacttaaaatatttttatagccTACTAATGATGACCAATTATAAAGTAATCGCTAAACTATACAAAGTGGTTTACAGAAATACGAGTAGCAGACCACCTTTATGGACAAAAAACCAAAGGCTTTTAGACCACTGATCACTATTTCTTGTTAGTATACaacatttcaaatatatttgaCAACATATTCTATTTGTTTGCAAAAGATTCCCAgtgcaaaatgtattatttatacttttacaATTAGAAATGATTTCTGTCTTGATGGACAGCTGTACATCAgtgttttactgtagtaaaatcaGTGCAGTTTGCGTCACTTGTGTCAAAATCTGCTTTTGTTCATTGAGAATTAGCACAGTTTGTTTAAAAGTATTATGTGCTGTCACTATAGAGAAAATgagagtgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatggagCAGTCAGAGATATTCCGGATGAGATCACTGAGATTACTGAAACAGATTGTTTACTTTAACAAGCATATTTGTGCATACcgaatgtgtgtgtggaatgtgtgtgtgcttgctctAATTCTGTCTAATTGCATGATCTGGTCAAATGCCACAGATTTTCATTGAAGCAGAGAGGAAGTGTTCTATTTTGTTACAGTGTCTGACATACAGTACCACGAGGTCCTGAATAAAGATGAAGGAGTACAGTGAA
>TCONS_00001580
CCTTGCACACAGCCGCAGCACCGGGAGGATGGATGGAGCGGGCTCGTTTGGAGCGGGCCGAGCCGGTTCGGCCTTTGATCTGGTTGCGTTCGTCAAACAACCACAGACAATCCTAAGAGCGTTGGCATGGATTTTCTCCATGGTGGTCTTTGCGTCTATAATAAATGAGGGCTATGTGAATATGGGTAGCGAGCGGCTGCATTGTGTGTTTAACAAGAACGCAGATGCCTGTAACTACGCCATAACTATAGGAATTATGGCGTTCTTAGCAAGCGTCTTGTTTCTGGCCCTGGACGTCTACTTTCCTCAGATCAGCAGCGTCAAAGATAGAAAGAGAGCAGTGCTGCTGGAGATTGCTTTTTCAGgaTTCTGGACGTTCCTTTGGTTTGTAGGATTCTGCTTTTTGGCCAATCAGTGGAGTCGTACGTCTGATAAGGAGCTTCCTCTGGAACAGGCTTCAGACGCTGCACGAGCTGCTATTGCTTTCTCTTTCTTCTCCATCCTGACCTGGGTAAAACACCCCACCTCctgcatatatacacactcactatcaTGCTTATATTTGATTGTCAGTGTTGGTGTTTGTGTTTCAGGCATATCTGTGTCTGCTAGCTGTGCACAGGTTAAAGAGCACTGCCTTTATGGAGGATAAGCACAAGCTTTTGTCCCAGAAGCCTAACAGTCTCTCAATAGTGTAGATTTCCTGCACATTATGTTAATCTGAGAGTTGTAATATCGATATTTGATATTAATATGATCAATGCAATGTGCAGTGCTCACTAAAACAGCttagatttataataaacattataaatctataaaagaaaaaagaaaatacaaa

Function

symbol description
syngr3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031594 neuromuscular junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-6 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3).

Ensembl:

ensembl_id ENSDARG00000025034

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001579 False 3497 mRNA 0.35 4 8415983 8428761
TCONS_00001580 True 841 mRNA 0.44 3 8422092 8428736

Neighbor

gene id symbol gene type direction distance location
XLOC_000996 NA coding downstream 210755 8202390 ~ 8205228 (-)
XLOC_000995 grapb coding downstream 223565 8165340 ~ 8192418 (-)
XLOC_000994 FAM83G coding downstream 274848 8127675 ~ 8141135 (-)
XLOC_000993 si:dkeyp-9d4.3 coding downstream 314488 8022320 ~ 8101495 (-)
XLOC_000992 si:dkeyp-9d4.2 coding downstream 395394 8017069 ~ 8020589 (-)
XLOC_000998 NA coding upstream 76216 8504977 ~ 8510066 (-)
XLOC_000999 zgc:112980 coding upstream 110910 8539671 ~ 8553298 (-)
XLOC_001000 ptcd1 coding upstream 126562 8555323 ~ 8566567 (-)
XLOC_001001 NA coding upstream 150394 8579155 ~ 8587359 (-)
XLOC_001002 NA coding upstream 183814 8612575 ~ 8625266 (-)
XLOC_000985 CR855320.6 non-coding downstream 495777 7920119 ~ 7920206 (-)
XLOC_000981 BX908756.3 non-coding downstream 571621 7771557 ~ 7844362 (-)
XLOC_000982 BX908756.2 non-coding downstream 614337 7801531 ~ 7801646 (-)
XLOC_000980 NA non-coding downstream 714127 7700023 ~ 7701856 (-)
XLOC_001008 NA non-coding upstream 545739 8974500 ~ 8977963 (-)
XLOC_001009 NA non-coding upstream 550144 8978905 ~ 8980671 (-)

Expression


Co-expression Network