CI01000055_03909546_03911972


Basic Information

Item Value
gene id CI01000055_03909546_03911972
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3908867 ~ 3912179 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_03909546_03911972.mRNA
ATATATAAGAGAACTTTCACCAATTAGTGAGGAGAAACAGGAGAGGGAGCTGCCGCAGAGATGGTGCTCAAAGAGCCAGGCCTTGCGGCGAAGCTGTCATGTCGGCTGGATTGATCAACAGGCCTGCTATTTCTAATGGCATGTTGTCATGAAGCTGCAGCCATAGGGAGCCACCTGCCTCACTCCTTGTAGACAGCAAAATATATGTGTGTGTGTGTGCGGGAGAGGGTGTGCTGCAAAAAAAGAGAGGGGCTTATGGTGTTTGTGTCTGTCGTGGGGGTGGGGGGGGATTCCAACACCATACTTTTACTTCAACTAACAATTTGAGAAAAAACTCTATACCTCCTCCCTGTTACTCCTCGACACCCTCCCCATCCCTCAGCTGTTGATATGACAGGTGCACTACTGCTCTTTTCTTAGCACCCAGACCGCAACACAAAGCCCCGGCAATGGCAATACGGTGAACGATCTGCAACAATAGATTTAACGCAACTGTTTTCTGTGTGGTAAACCTATGTGTGGTAGTTCGGAAGGTTCTTTTATGATCAACATCTTTGATGGCACAACTAAAGGCTAAATAGGCTAAACATCGCTAATTATCTAAACGTTAAAATAGCTAGCGAATACGTAAATCAGATTTAGCACAAAACAAAAAAAAGTGATGAAACACTTTCAAAAAATGAGCAAGGATGTTTCATGCTTCTGTGGACACAAACAAGTAGCCGTCCTTCATTTCGACTCTCCACGGGCGCAGAAGTGCTGCCTCGCTAACGATGAAAAGTCAAATAAAAGTTACAGAACTTTCGAGTTCAAGGTAGCGCTAGCCATTTTGAGTGTATGTCACGTACAGGACTGGGCTCTTCCCGGCACTGCAACAGTGGAGAGTACTGACACAGTACCGAGAATCGCCAGGATGAAAATATCACTCTTTATAATGGGGCCTAATCAGATTTCGGAGGCCATTTGCCTTCTAGTGAACGCTGGATGGGTGTCGTGGAGCTGCGGCGGTGTAACCTATACACGTCCCGTGCCCGTCTGCACTCCCCGTCCGTCTGCCCCTCGGAGCTGAGTATTAAGAAGGTTACATTTATCAAATGACTGATCACCAAAGGGGATCAGTGAGAAGATCTTTCAAAGGAAGTGCTGAAATGAAATGTAAAGAGTATTTTGTCCTTCGACTCTGACAGAAAATTGATTACTTTCATAATGCTGAGTTTTTCTTACCAACCTGCTGAAACAAACACACACACATAAATTCACAAAAACAAACCTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_03909546_03911972.mRNA True 1276 mRNA 0.45 2 3908867 3912179

Neighbor

gene id symbol gene type direction distance location
CI01000055_03903278_03905608 NA coding upstream 3133 3903090 ~ 3905734 (+)
CI01000055_03795753_03805149 ALDH18A1, P5CS coding upstream 102088 3795703 ~ 3806779 (+)
CI01000055_03752947_03764493 SLC35F3A coding upstream 143822 3752947 ~ 3765045 (+)
CI01000055_03745295_03748598 KCNK1A coding upstream 159641 3743485 ~ 3749226 (+)
CI01000055_03717618_03733174 THBS2, THBS2B coding upstream 175270 3716053 ~ 3733597 (+)
CI01000055_04023182_04033823 CADPS2 coding downstream 111003 4023182 ~ 4033895 (+)
CI01000055_04035172_04094367 CADPS2 coding downstream 122918 4035097 ~ 4094656 (+)
CI01000055_04097751_04100235 FEZF1 coding downstream 184608 4096787 ~ 4100495 (+)
CI01000055_04104413_04124421 AASS coding downstream 192234 4104413 ~ 4124421 (+)
CI01000055_04220373_04228785 SLC15A5 coding downstream 308194 4220373 ~ 4228906 (+)
G239599 NA non-coding upstream 200863 3707467 ~ 3708004 (+)
G239598 NA non-coding upstream 203642 3705024 ~ 3705225 (+)
G239565 NA non-coding upstream 283862 3624783 ~ 3625005 (+)
G239546 NA non-coding upstream 327757 3580901 ~ 3581110 (+)
G239535 NA non-coding upstream 390737 3509117 ~ 3518130 (+)
G239748 NA non-coding downstream 214348 4126527 ~ 4127026 (+)
G239754 NA non-coding downstream 337339 4249518 ~ 4250917 (+)
G239799 NA non-coding downstream 347151 4259330 ~ 4261799 (+)
CI01000055_04265119_04272728 NA non-coding downstream 360817 4265119 ~ 4273913 (+)
G239804 NA non-coding downstream 362116 4274295 ~ 4274524 (+)
CI01000055_02542526_02542861 NA other upstream 1364749 2542216 ~ 2544118 (+)
G238534 NA other upstream 2239623 1668410 ~ 1669244 (+)
G237840 NA other upstream 3488935 418925 ~ 419932 (+)
G237680 NA other upstream 3887705 20902 ~ 21162 (+)
G239761 NA other downstream 250071 4162250 ~ 4213402 (+)
G239755 NA other downstream 342031 4254210 ~ 4255092 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 1253313 5162990 ~ 5166647 (+)
G240099 NA other downstream 1624339 5525472 ~ 5544153 (+)

Expression


Co-expression Network