XLOC_000999 (zgc:112980)


Basic Information

Item Value
gene id XLOC_000999
gene name zgc:112980
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8539671 ~ 8553298 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001582
CCTTAAGAAGAAAACGTGAACATTTCCGGTTTGGTCAGGATCAAAAAATCCAGACGAAGCGCCAAACTTTGAACCCGCACGTTCGGGGTGGAATTTGAAGATAAACGTGATGGAGCACAATTCAATTATAGTTTTAAGCGACGATGAGGATGAAGGCAATTTCTCAATGACCCTCAACGATTCCTCTGTGCTTATCGTTGAAAATGAGACGAAAGGACCAGATGTGCCCAGGCATATCGAGGAGGTGGATGAGGACTTGGCCATCACATACTCCCAAACCGCAACAGTTCTTCCACATGCTAGATACGACTGTGTTCTGCCTTTCTGTCGAGAAGAGCAGAACGTCTCTGGACCTCTACAAGATAATGCTAAGCACTGTGATCAGTGTTTCTGCTATATCTGTGACAAACTAGCCTCCATGtgtgactttTGGACCATTCCTGGCTTTTGCCACTGCAATGCTCATAAGCACAGCGTCTACTGGAAAGCCCTCCGTGAcaagtgcatgatgggatttcTGCATGAGCTGAACTTTACCTTTGATCCATCAGAAATGGATTCAGATCTGCGGCGTGCAGAGACTTTACTGCAGAAATTTGCTGGCAGTTTAGCAATGaaatatgcaaagtttttgttgGGGAATGAGAATCCCAATCAAAAGGACTGCCGCTGCTACTGTCATCACAACAAAAATGCCTTTACACAGAACCAGACCTTAGGATGCAAAGGATGCAGTGGACACCACTTTAAAAACCTGGAGTATGATTACAGTGGTGTCAGTCatcatcttaaaatgtttttcaacgGAGCAAATGAAGAGAACCCCAAGACTTGTGTTGTTATGCTTTTAGGGGCAATCAAGCTTTTCATCACCCACACAGCTCCTGGAAATATGCATGCTATTAAAACTGTATCTGAAATGGTGTCAATGCTCCTGTGGAGGTTTATGACGAAGGTGTGGACACTTTTAGTTGAATTTGATTTCTCTAGCACATTTTTAAAGCACCTTGATTCTTTCGTCCAGAGGATTCCCATGGCTGCAAACTGCACCTTGCCAAAAAGCCTAAGCGTGCTACCTTGGGATGATCCACTACTCTCTTCTGTAATGAAAGGTCAGAACATCACTGGAGAGAGGCAGCTCAAAGGTCGAAAGGTTCAGCTCTTGTGTGAACATCTGACTGTGATTCAAGCAAGAGTCTGTAAACTTCAGCGGCAAAACAAGTACAGAGAGCTGGCCCGCTACCTCAAAGTTGTCAGATGCATTAATAATCCAACGCTGCAGAGAATGAGAGACTTGGTTCCCCTCTACCTGTGCAAGGTTGGAGACTACACGGGTGCAGTCCAAACCATGTTATCCCCAATGCTTGGTGCTCCTTCCTCTGCCTCTCGACTCACACCTGCACAGTTCAGAGCTTATCTGCGGATTCTGACATCAGGTCATGCACCGGACATAACACTGCCAGAGCTTGACCCAGAGAACGGTCATGTGATCACATCAGATCCTTTATTGAGTACTAAGTGGACGCCCATCGAAGGTGTAAATTCCTTCAAGAGTATGGAGGTGCTGAAGTTTGCACTGAGGGTTCTGGACTGCAACAGCACTGTTTTTGCAGATccgGAATGCTGGGTGTATCTGCTCAGCGTTGTCAGTTCCAGCTTTATTACTCCAGAAGGACTGGTTGTTGGTGCATTGTTTGCCGAGCCTGACATCAACTTTCAAACGGTGACCAGAAAGGCTGCCAATGCAATTCTCGAGGAGCTGACAAGTACATCGCGCATACAGGTCCCCAAAACATTTGATATTGGTTATCCTGACCAAGCTAGACTGCTGTTGGCCGTTCAGGCTTTGACACTGCGTATATTCCACTCACAACTCCGCCCCATCCTTGGTGTCATCACTGTTTTTAGGTTGAACCACTGGGCGCTTCATTGGTTCTTCAACAGTCTTCTGGTAAAGCCTAATATTCTGCAATATGTCCTGTCCTGCGTGCTGGAAGAACTGTCTCACGAACCCTACGAGAGAAAATTGAGCGAAAGCGATCACTCCCTGGTTGCTTACTTCCTCTGCATGTTCTTCCTGGAAAACAGCATTCTTCTAGATGCTGCATCCTATCCCATCAGTGGTCTGCTTGCGACTTGGGACGAATCGCACAACCCTTGGCAAATACGCTTGAGGCTGCATCTTGAAtgcaatGCTGCAAGACTCACTCAAGAAAAACGCCAAATCCTGCAGCTCATCCAACGCCTGAGAAAATGACCCTGACTCATCCTGAAGAAAAGAATATTTATGGGTTTTATTGTAGTTAAGatcaattttttatttcttatactttTTAATAAGGCTGATTTTGTTATTTGCACAGTTATATTCAGCAAACAGAGTTTCAAGTCTTTAAACATTAgtggtattgtaaataaatagttaaGATTCAAATGCAACTGATACAGAGCTGTTCAATATTGCTTTGTTATACAGTAGCTCATTTAAGCTTGTGAATGATTGCAATTCTCAGGGAACTTTTCACAAGCAATTAAGCCATAATTACTGTATAAGTGCCTTTTGTAAACAAGATATCACAACATGCAGAAACTGTAAATATAATGTTAAAGCTGAGCAACACAGCTTTGTGTCTGCAGTCAAAGCCAAGTATTACAACACTACATTGCACAAA
>TCONS_00001583
GGCTTTAGTTGAACCACTGGGCGCTTCATTGGTTCTTCAACAGTCTTCTGGTAAAGCCTAATATTCTGCAATATGTCCTGTCCTGCGTGCTGGAAGAACTGTCTCACGAACCCTACGAGAGAAAATTGAGCGAAAGCGATCACTCCCTGGTTGCTTACTTCCTCTGCATGTTCTTCCTGGAAAACAGCATTCTTCTAGATGCTGCATCCTATCCCATCAGTGGTCTGCTTGCGACTTGGGACGAGTAAGCTGCAGCAACCCTTCCCTACTGAAATGCTTATTGTTTAACATGGGCCATTACTAAAAGTTGTTTTAATGATGTTTGTGCATAAATATTTAGTCTAATTCAAATATAATGTTGGAATTGACCCTTC
>TCONS_00001584
cttttttaaaattatttgttacTTAAGAATATAATGCTTTTTCTATGTCTTCATTTAAAGGTGTAAATTCCTTCAAGAGTATGGAGGTGCTGAAGTTTGCACTGAGGGTTCTGGACTGCAACAGCACTGTTTTTGCAGATGtaagtataaaatgtatatacataaaaCACCAAAGTGAATTAAGAAGTGATTTTTGCAGAAAAGAGCGTTATTTGAAAGCCCCAAATCATGCTTGTGACCCAaaaggattttatttttttttttaaattaacatttttatttaattagtttttcttttgtattgtGTCAGGGGCAGCATCAAAACATGTTGTGATACATCTATGGATTTTGCTGGTATAGGATTCTGATGGAAATCTACTGGAGATACTGCTCTCCTTAAAAACATAACTAGAAAAttgtacacataccttagaaacGGTATCGCATAATTTTGTCAGTTTTAAAACTTGACTTTTCAAatccacggtataccttgaaactggttatcgtcccatgctaGATGCATCAACCCATTATAATTTAATTGATTAACTCTTCATGTGTGTTAAAGACTGTCTGTCAGCATGAACCCTAATTATCTCTTCAGATCTGCTGCCTTTTTTTATAACAGAAGGTccgtttgtttttttgtttttagccgGAATGCTGGGTGTATCTGCTCAGCGTTGTCAGTTCCAGCTTTATTACTCCAGAAGGACTGGTTGTTGGTGCATTGTTTGCCGAGCCTGACATCAACTTTCAAACGGTGACCAGAAAGGCTGCCAATGCAATTCTCGAGGAGCTGACAAGTACATCGCGCATACAGGTCCCCAAAACATTTGATATTGGTTATCCTGACCAAGCTAGACTGCTGTTGGCCGTTCAGGCTTTGACACTGCGTATATTCCACTCACAACTCCGCCCCATCCTTGGTGTCATCACTGTTTTTAG
>TCONS_00001585
TTAAAAGTAGAACAAATGAACATAAAAGCTTTTTCACACGACACATGCTGACTTAAGCTGACCTCGAGTTCGCTTCTTCTCGTTCTTGTTTACAGGATGGAGCACAATTCAATTATAGTTTTAAGCGACGATGAGGATGAAGGCAATTTCTCAATGACCCTCAACGATTCCTCTGTGCTTATCGTTGAAAATGAGACGAAAGGACCAGATGTGCCCAGGCATATCGAGGAGGTGGATGAGGACTTGGCCATCACATACTCCCAAACCGCAACAGTTCTTCCACATGCTAGATACGACTGTGTTCTGCCTTTCTGTCGAGAAGAGCAGAACGTCTCTGGACCTCTACAAGATAATGCTAAGCACTGTGATCAGTGTTTCTGCTATATCTGTGACAAACTAGCCTCCATGtgtgactttTGGACCATTCCTGGCTTTTGCCACTGCAATGCTCATAAGCACAGCGTCTACTGGAAAGCCCTCCGTGAcaagtgcatgatgggatttcTGCATGAGCTGAACTTTACCTTTGATCCATCAGAAATGGATTCAGATCTGCGGCGTGCAGAGACTTTACTGCAGAAATTTGCTGGCAGTTTAGCAATGaaatatgcaaagtttttgttgGGGAATGAGAATCCCAATCAAAAGGACTGCCGCTGCTACTGTCATCACAACAAAAATGCCTTTACACAGAACCAGACCTTAGGATGCAAAGGATGCAGTGGACACCACTTTAAAAACCTGGAGTATGATTACAGTGGTGTCAGTCatcatcttaaaatgtt
>TCONS_00001586
ACCCCTTAAGAAGAAAACGTGAACATTTCCGGTTTGGTCAGGATCAAAAAATCCAGACGAAGCGCCAAACTTTGAACCCGCACGTTCGGGGTGGAATTTGAAGATAAACGTGATGGAGCACAATTCAATTATAGTTTTAAGCGACGATGAGGATGAAGGCAATTTCTCAATGACCCTCAACGATTCCTCTGTGCTTATCGTTGAAAATGAGACGAAAGGACCAGGTAATCTTCGTTATGTCAATACTTAAATATGACAAAACAAAAGAGATGTGCCCAGGCATATCGAGGAGGTGGATGAGGACTTGGCCATCACATACTCCCAAACCGCAACAGTTCTTCCACATGCTAGATACGACTGTGTTCTGCCTTTCTGTCGAGAAGAGCAGAACGTCTCTGGACCTCTACAAGATAATGCTAAGCACTGTGATCAGTGTTTCTGCTATATCTGTGACAAACTAGCCTCCATGtgtgactttTGGACCATTCCTGGCTTTTGCCACTGCAATGCTCATAAGCACAGCGTCTACTGGAAAGCCCTCCGTGAcaagtgcatgatgggatttcTGCATGAGCTGAACTTTACCTTTGATCCATCAGAAATGGATTCAGATCTGCGGCGTGCAGAGACTTTACTGCAGAAATTTGCTGGCAGTTTAGCAATGaaatatgcaaagtttttgttgGGGAATGAGAATCCCAATCAAAAGGACTGCCGCTGCTACTGTCATCACAACAAAAATGCCTTTACACAGAACCAGACCTTAGGATGCAAAGGATGCAGTGGA
>TCONS_00001587
ACCCCTTAAGAAGAAAACGTGAACATTTCCGGTTTGGTCAGGATCAAAAAATCCAGACGAAGCGCCAAACTTTGAACCCGCACGTTCGGGGTGGAATTTGAAGATAAACGTGATGGAGCACAATTCAATTATAGTTTTAAGCGACGATGAGGATGAAGGCAATTTCTCAATGACCCTCAACGATTCCTCTGTGCTTATCGTTGAAAATGAGACGAAAGGACCAGGTAATCTTCGTTATGTCAATACTTAAATATGACAAAACAAAAGAGGTGAGTGTTCAGAAGTATCAACAAGTAACCACGTTTTCTTCAGTGTTATGCTAATATAATGCTTGATTTTACGTGTAATATAGGCATAGCATGATTTTAAAAAGCGATTACTATGCTAATTACGTTTATTGATGTCGTATACCCTTTTAAAGTCTGGTGTTCC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-1 No description available

Ensembl:

ensembl_id ENSDARG00000037739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001582 False 2672 mRNA 0.44 21 8539671 8553295
TCONS_00001583 False 374 lncRNA 0.43 2 8543152 8543611
TCONS_00001584 False 951 lncRNA 0.37 3 8543687 8545359
TCONS_00001585 False 785 mRNA 0.44 6 8549849 8553165
TCONS_00001586 False 787 lncRNA 0.44 6 8550017 8553298
TCONS_00001587 True 432 processed_transcript 0.38 2 8552750 8553298

Neighbor

gene id symbol gene type direction distance location
XLOC_000998 NA coding downstream 29605 8504977 ~ 8510066 (-)
XLOC_000997 syngr3b coding downstream 110910 8415983 ~ 8428761 (-)
XLOC_000996 NA coding downstream 334443 8202390 ~ 8205228 (-)
XLOC_000995 grapb coding downstream 347253 8165340 ~ 8192418 (-)
XLOC_000994 FAM83G coding downstream 398536 8127675 ~ 8141135 (-)
XLOC_001000 ptcd1 coding upstream 2025 8555323 ~ 8566567 (-)
XLOC_001001 NA coding upstream 25857 8579155 ~ 8587359 (-)
XLOC_001002 NA coding upstream 59277 8612575 ~ 8625266 (-)
XLOC_001003 fbxl18 coding upstream 84864 8638162 ~ 8646941 (-)
XLOC_001004 actb1 coding upstream 95801 8649099 ~ 8653385 (-)
XLOC_000985 CR855320.6 non-coding downstream 619465 7920119 ~ 7920206 (-)
XLOC_000981 BX908756.3 non-coding downstream 695309 7771557 ~ 7844362 (-)
XLOC_000982 BX908756.2 non-coding downstream 738025 7801531 ~ 7801646 (-)
XLOC_001008 NA non-coding upstream 421202 8974500 ~ 8977963 (-)
XLOC_001009 NA non-coding upstream 425607 8978905 ~ 8980671 (-)
XLOC_001010 NA non-coding upstream 528544 9081842 ~ 9082772 (-)

Expression


Co-expression Network