CI01000300_04465330_04479739 (PI4K2B)


Basic Information

Item Value
gene id CI01000300_04465330_04479739
gene name PI4K2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4465098 ~ 4481238 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_04465330_04479739.mRNA
CTTTAAAAAACCTGTCCGGAGGTGCGGGTAGCAGTGCGCATGCTTAAGAATAGAGGAAGTCGGTAATGGTGACGGATGATGTGGACCTGAATCGGTCGAGAGCATCAGCGCGTCTTCAAGAAAGAAAGAAAGAAAAAAAACCTCTTAAAGACGGACTCACGGATATGAAGCGGGGTTTTTGAGAGGTGTTTGAGTTTCTCTGGACAGAGACAGAATACACCCACAGTCCGCGATGATGGCAGAATGCGATCCCACCGACGGCGAGCCGGAGAAAGGCGGCGGAGATTTAACACCGGAGACGAACTTTCTCACGTCAGAGGTGCCCGCGGTGTTATTTGAAAAGACCCGGCCGGTTCCGTCACTGGGACTTTCGCTGAACCCCGGGGCAGCGGTCCGGATCTCGGACTCGACGGAAAGCGTGCTAACGGAGCTAGAAGCGGACGGGTCGGGGGAAGAGGCGCTTCTGTTACCAGGACCTGCCGGAAATCTCTCACCTAGGGCTGGAAGAGAAAAAAGGACGCGGAGGAACAGACATAGCTCATCATCTGATAATCTGGCATCTCCAGGTAATAGCAGTGGAGAATTCAACCATTTCCCAGAAGACCCAGAGTTTGGAGAGATTATCCAGAGGGCGGAGCAGGCAATAGAAAATGGCGTCTTTCCTGAACGCATCTCGCAAGGATCCAGCGGAAGCTACTTTGTCAAGGATCCTAAAGGGAAAATCATTGGTGTATTTAAACCAAAATCAGAGGAGCCTTATGGTCACTTAAACCCTAAATGGACCAAATATTTCCATAAAGTCTGCTGCCCGTGCTGTTTTGGCCGTGGCTGCCTCATTCCTAACCAAGGCTACCTCTCTGAGGCAGCTGCCTCACTCGTGGACCAAAAACTGGGTTTGGGGATCGTACCCAAAACTAAGGTTGTAAATTTGGCAAGCGAGACTTTTCACTATAGTGCAATTGACCGTGCCAAATCCCGTGGTAAGAAATATGCATTGGAGAAAGTCCCCAAAGTTGGACGGAGGTTTCACAGAGTTGGCCTTCCTCCAAAGGTGGGCTCCTTTCAGCTGTTTGTGGAGGGCTATCATGAAGCAGACTACTGGCTAAGGAAGTTTGAGGCAGAGCCTCTTCCAGAGAACATGAGGAAACAGCTTCAGTTTCAGTTTGAGAGGCTGGTGGTGCTGGATTATGTCATTAGAAACACAGACAGAGGGAACGATAACTGGTTGATCAAGTATGAAAAGCCAGGCGATGGAGAGCTGACAGAGAAGGAATCTGAATGGACTGACCCAAAAGACTCAGCCATAAAGATTGCAGCTATAGATAATGGTTTGGCTTTCCCTTTTAAGCACCCTGATGAGTGGAGAGCATATCCGTTCCACTGGGCTTGGTTGCCTCAGGCCAAAGTGCCCTTCTCCCAGGAGACCAGAGACCTTGTGCTCTCACGCATTTCTGACATGAACTTTGTACAGGACCTCTGTGAGGACCTTTATGAGATGTTCAAGACGGATAAAGGGTTTGACAAAACCATGTTTGAGAAACAGATGTCCGTTATGAGAGGACAGATCTTAAACCTGACCCAGGCTTTGAAAGATGGGAAGAGCCCCATCCAGTTGGTGCAGATGCCTCGTGTGGTGGTGGAGAGGAGCCGTGGAGGAGGCCAGGGTCGTGTGGTCCAACTGGGCAATGCTTTTACCCAGACGTTTCACTGCAAGAGACCCTTTTTCACCTCCTGGTAAAGGGACCTCACAGAGAGGAGGAAGACTGAAGTGAAAATGGACGAGGGTCAGATTCAGACACTGGATGGAGAACTTTCTGATAAGGACTTCCTGGATGAATGTAGCAAAGAGAGAGACTTAAAAGACTGCACAGAGGTCTGTTGTGGAGGATCTGAGGCCTTTTGTTTTCCTGAGCCTTTTCCCAGAATTCTCCTCTTCAGCTCACTTTGGCTGTCAAGTTGGAATGTCAAAAGGGAATCGTTCTTTGAAAATGTTGAAGTTTTGTCGTGACAGCCTTTCTCAACTGCCAATTATTTTGTAAGTATAAATATAGATATTATAAATGAAGAATGATGCATAAAATGTAATTTAAACTTGAAAAAATGCTTGAATGTATCCTGCAAGTTTACATTTTACACTTCTCCTGAGGACATTTCAACACCAAGGAACACTGGTGACCGTGGTATTTAATATGATGAATGTATTTGCTGATCATGTAACAGGATGCTGGTAACAGTATATACATTGTTAAAAGTGGGTGATTTGAAGCCCCTGGTAAAAGTATAATTCCAAAAGGTTTTTTTCTCTCTTTCACACAATCCCGTGTATGCATCTTGGACTTTGTATTCCAGCTGAACGGTTGCTAAAGTAGAGCTGTATATTAAAAATGAAGTAAATAAAAAAAAAATAAATAAATAAAGCTTTGGTATTGGTAAAAATAGACCTAGTGTTATTTATTTTTAAGTTCTCAATTTGTTTGTAGCCGATCATCACCTCTAAAGCCAGCATTCTTATTTTTATTTATTTATTTTGTATCTTTTCCTCCGTAAACCACTGTTAAATGCTTTTTTGGGGGCTTTTTTTTTTTTTTTTTTATCTTATTGCTAAGTAGTTTTATCTTATTTTAATGATTGTTTTCTTATTTTAGATCATTTTAAGTAATTTTGAGGCCCCTGGTCTCCTGGTTGATAGCCAAAATCTCTGAAGGGTTGTAGTCTTGTTCTGTCATTGTGCTGCCACCCTGTGGGCACTTTACGTAATGAAAACCGGACTCACTTAGCTCGTCCACCTTACTTACTGTATTTGCAGTGAAGAAAGTGTTCATATTTTTAGTGTTTTTGCTTCAAACTTTGTAGTACCTACCTGTATAAACCTAGAGTGAGTAATGTTATTGTAACAGAAGTCCTGTTCCAGAGGACAAAGTGACTTGTGTGAACTACGTCTGCTACTTCTACCGTGTGTGGAGTGCTGCAGGTGACTAATAGGTGGCAGTGTTCACTCACTCACGAACACCACGTCCTCACGGGCTGAGACAGAATCCCATTGATAACATCGACCACATCCTGAATAGTTTTCTCCTTGCTGTATCTTGCATGTCAAAATAAGCCAAAAAGTTGATTAATCACCCACTGAGACGAAACGAGTACACAGTTTGCTGTTCAATCATGTTCTCTTAAACACAATGTCTATCAAATATATATTCGTATGTGAAACGATGATGCTATAGGGAATCGGCTGAA

Function

symbol description
pi4k2b Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within pectoral fin development. Predicted to be located in cytoplasm and membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Is expressed in pectoral fin bud. Orthologous to human PI4K2B (phosphatidylinositol 4-kinase type 2 beta).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13711 PI4K2; phosphatidylinositol 4-kinase type 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_04465330_04479739.mRNA True 3237 mRNA 0.44 10 4465098 4481238

Neighbor

gene id symbol gene type direction distance location
CI01000300_04443587_04462530 HGSNAT coding upstream 2379 4443587 ~ 4462719 (+)
CI01000300_04439356_04442462 NA coding upstream 22408 4439218 ~ 4442690 (+)
CI01000300_04391216_04429569 PCDH7A coding upstream 34944 4390758 ~ 4430154 (+)
CI01000300_04211928_04219961 NA coding upstream 244955 4211169 ~ 4220143 (+)
CI01000300_04105718_04107800 NA coding upstream 357249 4105718 ~ 4107849 (+)
CI01000300_05022837_05027540 NA coding downstream 541599 5022837 ~ 5028915 (+)
CI01000300_05031151_05064873 TUSC3 coding downstream 549710 5030948 ~ 5065564 (+)
CI01000300_05176333_05206119 MICU3 coding downstream 695095 5176333 ~ 5207604 (+)
CI01000300_05217150_05224947 VPS37A coding downstream 734850 5216088 ~ 5225301 (+)
CI01000300_05259191_05302329 MTUS1 coding downstream 777368 5258606 ~ 5303111 (+)
G410710 NA non-coding upstream 57130 4404801 ~ 4407968 (+)
G410659 NA non-coding upstream 157285 4307570 ~ 4307813 (+)
G410649 NA non-coding upstream 194378 4270315 ~ 4270720 (+)
G410375 NA non-coding upstream 335743 4127176 ~ 4129355 (+)
G410368 NA non-coding upstream 379916 4083018 ~ 4085182 (+)
G410733 NA non-coding downstream 47794 4529032 ~ 4560250 (+)
G410776 NA non-coding downstream 175532 4656770 ~ 4658791 (+)
G410778 NA non-coding downstream 196310 4677548 ~ 4679504 (+)
G410820 NA non-coding downstream 318046 4799284 ~ 4799529 (+)
G410965 NA non-coding downstream 578657 5059895 ~ 5071843 (+)
G410388 NA other upstream 268543 4195646 ~ 4196555 (+)
G410382 NA other upstream 340682 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 562947 3901148 ~ 3902892 (+)
G409984 NA other upstream 1192700 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 2151204 2312515 ~ 2321088 (+)
CI01000300_05891147_05892754 HELT other downstream 1409829 5891021 ~ 5892824 (+)
G411777 NA other downstream 1988007 6469245 ~ 6469705 (+)
G413459 NA other downstream 4463245 8857687 ~ 8948603 (+)
G414249 NA other downstream 5888673 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 6118698 10604458 ~ 10605033 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000208 pi4k2b coding NC_007112.7 CM002885.2 15258641 ~ 15285455 (+)