G418134


Basic Information

Item Value
gene id G418134
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 632332 ~ 632665 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480300
TGTGTTTTAAATCTATTACCATTCCCTGGGATCTGAGGTATTTGGGAAATTTGAAGAGTCTGGTGAATCTGAGGTATCATGTGCCCATTGTCATTAAATGGGTGAAGTATTTGGTCATTAGTGGTAGGATTGAAGCTGCTGTGGTGTTGAGGGTTCATATCAGGATCCTCTTTGCTGTAACCACTCAGAGCAGAGCCCACCAGACAGATGCTGACATATTCATCTGTAGGGAACAGAAAACAGAGACCGTCAGCAGTGTTTGAGGTATCACAGTGTCATGCTCCCAGCCACAGAGGTCGGTCTTATGCCTATCACGGCCCACGAACCATGTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480300 True 334 lncRNA 0.46 1 632332 632665

Neighbor

gene id symbol gene type direction distance location
CI01000304_00480135_00531529 NA coding upstream 100295 479781 ~ 532037 (+)
CI01000304_00453663_00453991 CTXN3 coding upstream 177092 453663 ~ 455240 (+)
CI01000304_00424703_00434890 PRRC1 coding upstream 197266 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 211577 370333 ~ 420755 (+)
CI01000304_00315935_00342330 LMNB1 coding upstream 289809 314742 ~ 342531 (+)
CI01000304_00695426_00725459 SLC27A6 coding downstream 61796 694461 ~ 725459 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding downstream 95291 727956 ~ 732274 (+)
CI01000304_00757894_00760456 NA coding downstream 125229 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 138368 771033 ~ 827608 (+)
CI01000304_00846138_00850133 NA coding downstream 213394 846059 ~ 850379 (+)
G418132 NA non-coding upstream 3806 628321 ~ 628526 (+)
G418093 NA non-coding upstream 6734 625398 ~ 625598 (+)
G418090 NA non-coding upstream 8142 619225 ~ 624190 (+)
G418089 NA non-coding upstream 13431 618605 ~ 618901 (+)
G418088 NA non-coding upstream 25374 606641 ~ 606958 (+)
G418138 NA non-coding downstream 4572 637237 ~ 637458 (+)
G418142 NA non-coding downstream 11595 644260 ~ 644561 (+)
G418145 NA non-coding downstream 20987 653652 ~ 653903 (+)
G418148 NA non-coding downstream 31595 664260 ~ 664617 (+)
G418149 NA non-coding downstream 33952 666617 ~ 667483 (+)
G418059 NA other upstream 67881 558092 ~ 564451 (+)
G417987 NA other upstream 404479 226703 ~ 227853 (+)
G418116 NA other downstream 240005 872670 ~ 875249 (+)
G418981 NA other downstream 1459829 2092494 ~ 2093678 (+)
G420445 NA other downstream 3670671 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4540558 5173426 ~ 5176791 (+)
G421162 NA other downstream 5608568 6241233 ~ 6242997 (+)

Expression


Co-expression Network