G444653


Basic Information

Item Value
gene id G444653
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 371520 ~ 373464 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU510429
TCTCTGTTAAGCAGACCGGGCAAGTCGTAGTCCACTGGTAGCTCGTAACTGTGCCATAAGACAGACGCCACACAGTGCAGGTGTGACGGGGACGGCATGAGCAACCCGTATTCCCGTGGGGGCGGAGCGTTCGGACCCACGTAGCCTGACGGAGAACTCTGTTTCAGGGCAGCAACCTGGGAGGAGTCATACACCCACTGTAGCAGAGCCTGGATCCTGTCTTTGGTACCGGGGTCCTGAGTAGTGCCAAGCTGGTACAGGATGTCTATGGTTGAGTCTGACGACAGGCCATTTAACCTCCCGAAGAGCAGTGGACTGTTCAGATTGGCCAAATCAGTGCCAGAAGCAGCACAGTTGCGCAGCAAGATGTCGATGAGTTTGAGGCCTATGCGTGTGGACTGGAGGCCGATCTTCACTAGCACTGCTTCGATGTTGGGTGAGTGCATGCCGCAATACGGGGACATGAGGAGGGCGGCGCAGGTCTGCAGGAGGTTTGCCGTAGGAGCAGCAGCACTGGCCATCATGGCCTCCAGATCAGAAACGTGAGTCAAACAATGATGCAGCAACCGTAACCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU510429 True 576 TUCP 0.56 3 371520 373464

Neighbor

gene id symbol gene type direction distance location
CI01000313_00311563_00321609 NA coding downstream 49911 311472 ~ 321609 (-)
CI01000313_00294667_00301218 NA coding downstream 70302 294104 ~ 301218 (-)
CI01000313_00117452_00118526 NA coding downstream 252994 116594 ~ 118526 (-)
CI01000313_00028124_00047785 MRPS5 coding downstream 323735 27846 ~ 47785 (-)
CI01000313_00016648_00018929 NA coding downstream 352113 16370 ~ 19407 (-)
CI01000313_00698894_00703473 FAM98A coding upstream 325430 698894 ~ 703473 (-)
CI01000313_00713063_00727810 NA coding upstream 339542 713006 ~ 727810 (-)
CI01000313_00819117_00821323 PCGF5A coding upstream 445353 818817 ~ 821474 (-)
CI01000313_00822941_00823338 NA coding upstream 448995 822459 ~ 823338 (-)
CI01000313_00897217_00899112 NA coding upstream 522535 895999 ~ 899207 (-)
G444656 NA non-coding downstream 15471 339368 ~ 356049 (-)
G444658 NA non-coding downstream 20679 345557 ~ 350841 (-)
G444692 NA non-coding downstream 47225 323329 ~ 324295 (-)
G444605 NA non-coding downstream 111306 255617 ~ 260214 (-)
G444617 NA non-coding downstream 169330 182864 ~ 202190 (-)
G444740 NA non-coding upstream 57011 430475 ~ 430722 (-)
G444741 NA non-coding upstream 57928 431392 ~ 431624 (-)
G444799 NA non-coding upstream 168613 542077 ~ 544074 (-)
G444812 NA non-coding upstream 318088 691552 ~ 693656 (-)
G444892 NA non-coding upstream 355157 728621 ~ 728876 (-)
G444714 NA other upstream 24143 397607 ~ 400096 (-)
CI01000313_00982839_00997272 NA other upstream 613550 982829 ~ 997590 (-)

Expression


Co-expression Network