CI01000325_08701427_08704727 (NR2E1)


Basic Information

Item Value
gene id CI01000325_08701427_08704727
gene name NR2E1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 8701300 ~ 8704727 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_08701427_08704727.mRNA
GTCGGATTCTGGACATTCCATGTAAAGTGTGTGGAGACCGAAGTTCTGGAAAGCACTACGGTGTTTACGCGTGTGATGGCTGCTCGGGATTTTTCAAGAGGAGCATAAGGAGAAACAGAACGTATGTCTGCAAATCTGGCACACAGGGCGGCTGTCCAGTAGACAAAACACACAGAAATCAGTGTCGCGCCTGTCGCTTGAAAAAGTGTCTAGAAGTGAATATGAATAAAGATGCCGTGCAGCACGAGAGAGGACCGAGGACGTCAACCATTCGAAAGCAGGTGGCACTGTATTTCCGAGGCCATAAAGAGGTGAACGGTTCGTCGACCCATTTTCCATCCACGTCTATCCCGGGGCCGCCGTTTTTCACTACAGTCACACAGCTGGAGCCTCACAATCTGGAGTTAAACACGGTCACAAGCACACCGGAACGACAGGCCATTGTAGGACTCGCCCAACCCACACCGAAGTATCCTCACGAAGTCAGTGGCACTCCCATGTACCTGTATGAAGTGGCGACAGAGTCTGTGTGCGAATCCGCCGCGCGCCTGCTCTTTATGAGCATTAAATGGGCCAAGAGTGTTCCGGCCTTCTCCACACTCCCTCTACCAGACCAGTTGATCCTTTTAGAAGACGCCTGGAGGGAACTGTTCGTGCTGGGCATAGCGCAGTGGGCCATTCCCGTGGACTCCAGCACTCTCCTAGCTGTTTCAGGAATGAACACCGAGAACACAGATTCCCAGAGGCTAAACAAAATCATCTCAGAGATCCAGGCGCTGCAGGAGGTAGTTACGCGTTTCAGACAGCTCAGACTGGACGCGACGGAGTTTGCGTGCCTCAAGTGCATCGTCACCTTCAAAGCAGTTCCAACACACAGTGGTTCGGAACTGAGGAGCTTTCGTAACGCCAGTGCCATTGCAGCTCTACAGGACGAAGCCCAGCTGACTCTAAACAGCTACATCCACACCAGGTACCCCACTCAGCCGTGCCGCTTTGGGAAACTGCTGTTGCTCTTGCCTGCTCTACGTTCAGTTGGTCCATCCACCATTGAAGAGGTGTTCTTCAAAAAGACCATCGGAAACGTGCCCATCACACGACTGCTTTCAGACATGTACAAATCCAGTGATATATGAGCTACCGAGAGACAGAGAAAAGAAACAAAATGTATCTTTGACCTTGGAATTCGTATGGACGCTGGGACGCTGTGGATGATACCAGATGCCCTAATGTGATTCTTCACGCACTTGTTTGGAGAATAAA

Function

symbol description
nr2e1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; presumptive diencephalon; and presumptive neural retina. Orthologous to human NR2E1 (nuclear receptor subfamily 2 group E member 1).

GO:

id name namespace
GO:0048712 negative regulation of astrocyte differentiation biological_process

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_08701427_08704727.mRNA True 1260 mRNA 0.51 8 8701300 8704727

Neighbor

gene id symbol gene type direction distance location
CI01000325_08645444_08676032 NA coding downstream 25268 8644731 ~ 8676032 (-)
CI01000325_08609784_08639480 FOXO3, FOXO3B coding downstream 59261 8609624 ~ 8642039 (-)
CI01000325_08571807_08594165 NA coding downstream 106564 8568722 ~ 8594736 (-)
CI01000325_08517828_08523052 NA coding downstream 177844 8517614 ~ 8523456 (-)
CI01000325_08488183_08498054 NA coding downstream 201937 8488017 ~ 8499363 (-)
CI01000325_08919961_09083730 NBAS coding upstream 215234 8919961 ~ 9083730 (-)
CI01000325_09266964_09281814 SMEK1, PPP4R3A coding upstream 561897 9266624 ~ 9282062 (-)
CI01000325_09286047_09286556 ERH.L, ERH, ERH.S coding upstream 580807 9285532 ~ 9286556 (-)
CI01000325_09288339_09296072 NA coding upstream 583305 9288032 ~ 9296126 (-)
CI01000325_09334619_09368476 ROCK2B coding upstream 629877 9334604 ~ 9368476 (-)
G467811 NA non-coding downstream 104298 8596644 ~ 8597002 (-)
G467809 NA non-coding downstream 145482 8555358 ~ 8555818 (-)
G467808 NA non-coding downstream 146251 8554850 ~ 8555049 (-)
G467830 NA non-coding upstream 45264 8749991 ~ 8750230 (-)
G467832 NA non-coding upstream 46415 8751142 ~ 8751469 (-)
G467834 NA non-coding upstream 51427 8756154 ~ 8756434 (-)
G467835 NA non-coding upstream 51845 8756572 ~ 8756865 (-)
G467839 NA non-coding upstream 60994 8765721 ~ 8770555 (-)
G467741 NA other downstream 3717 8679172 ~ 8697583 (-)
G467578 NA other downstream 746108 7946345 ~ 7955192 (-)
G467570 NA other downstream 1084470 7615486 ~ 7616830 (-)
G465716 NA other downstream 3073132 5626213 ~ 5628168 (-)
G468702 NA other upstream 1462372 10023665 ~ 10193979 (-)
G468823 NA other upstream 1611403 10316130 ~ 10316685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018194 nr2e1 coding NC_007131.7 CM002904.2 32437396 ~ 32446406 (-)
bowfin (Amia calva) AMCG00003953 nr2e1,LOC107726614,LOC107601200,LOC107726424 coding CM030121.1 CM030121.1 26281536 ~ 26289404 (-)