XLOC_024190 (pim3)


Basic Information

Item Value
gene id XLOC_024190
gene name pim3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 29662411 ~ 29666902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047955
cacacacagacacatgaacCGAGCGCACCGACCGGGCTCAAAAGCGCAAACGTGTGCAGTTCTCTCTCACTATGGGTGCGCGGGGACATTTGTGAATAATTACTGGAGTTTGACACCTTTGTAAACGAGGATTCGGAATCCGTTTGCGATCATCCGTGGGATTTTCGGACGGAGTCCCACTCCTGAATACATTTTTTGAAGGGAATTCTGTCTTCTCGTTGAAGGACGGGGTGCCGGTGTTTTCCGGTGCGAAGCAGTTACGCATCTTTAAGGACTCGGATTTTTTTTGGAGAAGACAACAGAAGATGTTACTCTCCAAGTTTGGATCCTTTTCCCATATTTGTAACACGACCAACATCGACCACTTACCGGTGAAAATTCAACTCCAAGCAGCCAAGACCGAAAGGGAGCCATTTGAGAAGGTTTACCATGTGGGTTCGGTGCTGGGAAGCGGTGGGTTTGGTACAGTGTACGCCGGTACTCGTATCTCAGACGCGTTGCCGGTTGCAATAAAACACGTCGCCAAGGAGAGAGTGACCGAATGGGGTACTATTAACGGGTCGCTGATTCCACTCGAGATTGTTTTGTTGAAGAAAGTGGGAAGCACGTTTCAGGGGGTCATTAAACTCATAGATTGGTATGAGAGACCCGACGGATGGTTGATTATAATGGAGCGGCCGGAGATGGTGAAGGATTTATTCGACTACATCACGGAGAAAGGCGCGCTGGATGAAGACACCGCCCGGGGCTTCTTCAGACAGGTTTTGGAGGCGGTTCGCCACTGCTACAGCTGCGGGGTGGTTCACCGAGATATCAAAGACGAAAACCTCCTGGTGGATTTACGCACGGGGGACCTGAAGCTCATTGACTTCGGCTCCGGGGCCATCCTGAAGGACACCGTGTACACAGACTTTGATGGCACGCGAGTGTACAGTCCTCCTGAGTGGATTCGTTACCACAGGTACCACGGGCGCTCAGCAACTGTTTGGTCCCTGGGTGTCCTGCTGTACGACATGGTGTGCGGAGACATCCCGTTCGAACACGATGAGGAGATTCTGAGAGGACGGCTCTTTTTCAGAAGGAGAGTCTCACCAGtgtgTCAGCAGCTCATCAAATGGTGCCTCTGCTTGAGACCTTCAGACCGGCCCACGTTGGAGCAGATTTTTGAGCATCAGTGGATGCGGACGGAAGAAAACCCGAAAACAGCAGAAAGCGTCAACATCACACTCCACACCATCAGTACAGAAGCAGGAAATGAGAGCCTTTGACGGATGCGGGGATATGCAGAGTGACTCTTTGAGCTTTTTGCTTTTGTTTCCAATCTGTTGGTTATCAGGACTTCGATTTATGTTGCATAAttgtcttcttttttatttttggttgtgttTCTTGCTAAGGGTGAGTTGTTACCCGTAGGGATTGCGTGGGCAGTGATGCTGGTGATCCTTTGATTTTACTGGTTGCTCTTATAGAGCTtggacataattttttttagacTATCCTTTTAGTTTTCGGTGCCTTTTTTGAAAAGCTGCTTTTATGGGATTCAAGTCACGACAGACACCAGGTGGATTTTCATGGATTTTAGGGGAACTCCCCTGGACTCCTGGGAAGCTTCAAAGACTGTATGTAGTTTTGTGGTGGGTCTCCCTTGCCCTCTAGTGGTCGAATACTTGAAGTACACACTTACTACTCTTAACAGTATCTCTCTGCTGCTCTACCATTCATATTCACTATTTGGACAATTTCCCCCTTCTGTTGTTGTTCATTTTTCTGAATGTCTTCCACTATTTTATCTCTGTTGATGTCACTTTTTAGACTTTGCTTGGCAGAGACTTGAGTGATGTGCACAATCAATGCAATATTCATGGACTCACTTTCCttcccctctttttttttttttgacattttttattttttaaattcaagtatttgcattgtatttatgtacatttttttttcttccatgtatattatttattcatgcaaTACAAACATTCCACATTCagtggctatttatttatttattcattttataccATCTGCAAAAAAGTCAATTGAAAATGTAAAGAGTCCCCTGGGCTTTTCTTTAGTTTAACCTAAAGGGTCATAGACATGCTAAAGCTATCTAATACTGATACAAATATAAGATTGAGATGTTTAGTGATGCCATTTTCTGATGTAGTGTAAAATTTAGAATCAGTTTTCGCTCCATGTGAAGTggaagtaaaatgtgttttagtcCTTCCACTGTGACAGTGtggaattctttctttttttttttttttttgaactggtgaaacatttatttttttatattggacACAATAAATTCCTTTCATATGTAA

Function

symbol description
pim3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human PIM3 (Pim-3 proto-oncogene, serine/threonine kinase).

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-050809-111 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human PIM3 (Pim-3 proto-oncogene, serine/threonine kinase).

Ensembl:

ensembl_id ENSDARG00000055129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047955 True 2348 mRNA 0.44 6 29662411 29666902

Neighbor

gene id symbol gene type direction distance location
XLOC_024189 il17rel coding upstream 165409 29472361 ~ 29497002 (+)
XLOC_024188 CU469568.3 coding upstream 259138 29393532 ~ 29403273 (+)
XLOC_024187 CU469568.4 coding upstream 280053 29373563 ~ 29382358 (+)
XLOC_024186 pkmb coding upstream 465853 29160102 ~ 29196558 (+)
XLOC_024185 CR376821.1 coding upstream 590113 28989285 ~ 29072298 (+)
XLOC_024191 brd1b coding downstream 21769 29688671 ~ 29714525 (+)
XLOC_024192 NA coding downstream 371189 30038091 ~ 30045798 (+)
XLOC_024193 si:ch211-147k10.5 coding downstream 408045 30074947 ~ 30114384 (+)
XLOC_024194 api5 coding downstream 464153 30131055 ~ 30152039 (+)
XLOC_024195 NA coding downstream 505013 30171915 ~ 30194075 (+)
XLOC_023973 CR762411.1 misc upstream 14444302 15217824 ~ 15218109 (+)
XLOC_024184 NA non-coding upstream 689626 28972344 ~ 28972785 (+)
XLOC_024183 NA non-coding upstream 693329 28968233 ~ 28969082 (+)
XLOC_024196 dre-mir-129-4 non-coding downstream 509569 30176471 ~ 30176559 (+)
XLOC_024200 ticrr non-coding downstream 649937 30316839 ~ 30337989 (+)
XLOC_024201 NA non-coding downstream 675298 30342200 ~ 30344926 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_04644727_04647551 PIM3 coding CI01000055 null 4644130 ~ 4648605 (+)
bowfin (Amia calva) AMCG00006506 pim3 coding CM030134.1 CM030134.1 6855736 ~ 6860515 (-)