LOC110537848 (sp30l)


Basic Information

Item Value
gene id LOC110537848
gene name sp30l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58274018 ~ 58286628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624273.2
GCTGCAGTAGCAGGACGTGTTCATTGTACAAGCTATTCTGAAAGAATTACCGCGGCTGTTGAGGTGAAGTCTATGAAATACGTGATGTCTTCAAAATTGTTTAATCAGTGAAAGACGATTGAAGTGTTCCGATTTCGTGTGATATGTGCACCGTTTTAGCGCTATATGTACGAATGATAGAAAAGTAACGGTTGCGTGTTATCAGTTTAGGAATTTCGTTCGCTAGCAGTAGCTACTTAGCTAGCAAGCCACCTTGAGGTCCTGTCTCTTTCTTGACATTCTAGCCTGTATTGTGGTATGGGTTCCTAGCTTGACGACGAAACTCAGTACAGTGTCCTTTCATTACCTTTTCGCATTGGTTTAATATAAAATCAGTTACGACGATAACGATTGTCTGTAGAAGAAAGTGGCCATTCAAGGACGACAGAACGTTCTCAGTGGCTTTACAAGAAGATCCCCAACCCAACTATCATGAACGGGTTCAGCACAGAAGAAGACAGTCACGATGGACCTCCGGCTCCACCGTTTTACGGCCAGACTTGTTGTTTGATTGAGGACGGTGAGCGCTGCGGACGATCAGCTGGAAACGCTTCCTTCAGCAAGCGGATCCAGAAAAGCATATCGCAGAAAAAACTAAAGCTGGACATCGACAAAAGTGTCCGACACCTCTACATATGCGACTTCCACAAAAACTTCATCCAGAGTGTCCGTAACAAACGGAAGAGGAAGACGAGTGACGACGGAGGGGAGTCTCCTGATCATGATGTGGAGGTGCCAGAGGTGGATCTGTTCCAGCTTCAGGTGAACACGCTGAGACGCTACAAGAGACACTACAAGCTCCAGACCAGACCTGGCTTGAACAAGGCCCAACTGGCTGAGACTGTCAGTCGCCACTTCCGGAATATCCCCGTGAACGAGAAGGAGACTCTCACATACTTTATTTATATGGTGAAGAGCAGCAAAAGCCGACTGGACCAGAAATCAGAGGGCAGCAAACAGCTGGAATAAAGGCCACCAATAAGTCTTGGACATGAACACGTGTGTTTGATGAGGTGTTTCCGCCAGGCGGGCTAATCTGATTTCAGACTGTTGTCAAGACTCTCCGCAGGGTGATGTAATTCTGTAATGTGAATATGCCGATATGTACAAAACACGACAAGTATGAAGATATCAGCAACACGATAGAATGCAATTTCTGAGAACTGCCTTAAAGATTTGTTTGTATTTTGCATGGACCGTTAAGAACTTGAAGAAAGGCTTGTGTCCAACCAGAGTGTGTGCAAACATAATATTTCAATAAACTGGTCATGGAGCATTTTGTGAATGAAAAGATGGTGGATAAGGTTTTGGGAAGCGTTGCACATTTTCTGGTGTCCAACTAGAATTAATCAattaaggcccgagggggtgtggtctatggccaatataccacggctaagggctgttcttatacaTGACGcaaagcggagtgcctggacacagcccttagccgtggtatattggccatatcacACAAACCctagaggtgccttattgctattataaactggttatcaacgtaattagagcagtaaaaatacatgttttgtcatacccgtggtgtacgtctgatataccacagctgttgGCCAATCAACATTCCGGGCTCGAACAACCCAGTTTTATAATACTCATCCAGTGGTATGATATACATGGGAAGACTGAAGTTGAATGATGCAGCATTTTGGCCCTGACCCTTTTTTACATTGACTTGACCTGCTCTTTCCCGTCTaatacactgaaacacacacatactgcagaGTGAAATGGCGTCTCAGTGAACACCAAGCTCTTTTCAAGTATTGGTGGAAATATTACGTCTGACTCTTCTTTACTACATTTTCTACTTTTTTGTGAGATGTCAGTACTTTAGTTCATCTTTGATTGTCAGGTCTCTGTGAAGTTGTCTCTGGTGGAAAGTAACTTTCAGTCTGTATTCATTTTCATGGTTTCAGCTTTTGAGACTAATTTAAAGCAATTAATTGAACTTGTTCATTAGGGgtttaaaatgcattattattactTCTACTCTTATATTATTTCAGAAGAATTGTTGCTGTACTAACACAAACACGTAGAACGTCTCAACTTGAGCTCAATGAACCATATTTGAACCACCTAAATAGTTTTCAGGGCAGCACCCAAAGCACTGGCTGGACTTTGCCTTCGTGTTCACAATACATTTGTTCTATTCCATTGCAATGTATTTCTGTGGAATCATGTCACCCTCAGCTGTCAAGTCTATTTCCTCTCCTGGCACAGTGTTGAAATGATGTGTCTCGTGGGCACACAACCACACGATAACACTACGTACCGCTTCTAGTCGCTGGTTGAAGATGGGagttgtaataaatatataatatgtttTTGCTTTCCCTTAGTCACTATTTGGGGTTTTGTTCACTTCAACACTGCTGTGTGCTCGCTGTTTTGTTTGTCAGTGGTCTCTTCACAGATGATGCTATGCCTTAGTATTGATTAGGTTCTCTGTCCCAGACCTTATTTAAGTAATAAGTTATGTCTACTGTTTTCCATCTTACACCATCAATTAGTCATGTCTATGTAATTTGCTGAACTATggatggctttgtttttgcttgtAGCTTTGTAGTGCCAGATTTCCCTCTTGTTTCCCTCCTATGTTTTAGAATATTGGCTGTGCTGCGTAACCCAATTGTTGTATTATATAAGACACATTTATTTAAATATGGCTGCTTATTgcttttaataaatgtattgtacatAA

Function

NR:

description
Histone deacetylase complex subunit SAP30L

GO: NA

KEGG:

id description
K19202 SAP30; histone deacetylase complex subunit SAP30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624273.2 True 2785 mRNA 0.42 4 58274018 58286628

Neighbor

gene id symbol gene type direction distance location
LOC110537846 ggnbp2 coding upstream 1232 58225787 ~ 58272786 (+)
LOC118937686 NA coding upstream 51803 58216142 ~ 58222215 (+)
LOC110537844 LOC106567395 coding upstream 89569 58159958 ~ 58184449 (+)
ca4a NA coding upstream 172482 58076921 ~ 58101536 (+)
LOC110537841 mtmr4 coding upstream 202447 57893341 ~ 58071571 (+)
LOC110539153 LOC106604490 coding downstream 241662 58528290 ~ 58530219 (+)
LOC110538918 nkx3-2 coding downstream 258518 58545146 ~ 58546597 (+)
rab28 LOC106600633 coding downstream 288973 58575601 ~ 58625910 (+)
LOC110538919 atp8a1 coding downstream 404489 58691117 ~ 58827450 (+)
LOC110538920 NA coding downstream 564108 58850736 ~ 58873451 (+)
G1092080 NA non-coding upstream 49412 58224406 ~ 58224606 (+)
G1092077 NA non-coding upstream 60435 58213298 ~ 58213583 (+)
G1092075 NA non-coding upstream 63715 58209418 ~ 58210303 (+)
G1092074 NA non-coding upstream 65184 58208149 ~ 58208834 (+)
G1092102 NA non-coding downstream 6100 58292728 ~ 58292951 (+)
G1092104 NA non-coding downstream 7544 58294172 ~ 58294640 (+)
G1092105 NA non-coding downstream 8558 58295186 ~ 58295397 (+)
G1092107 NA non-coding downstream 25546 58312174 ~ 58312500 (+)
G1092111 NA non-coding downstream 52511 58339139 ~ 58339358 (+)
LOC110537831 dhx33 other upstream 1156091 57112902 ~ 57118165 (+)
G1091235 NA other upstream 1521071 56752418 ~ 56752947 (+)
G1091217 NA other upstream 1548015 56725607 ~ 56726003 (+)
G1093909 NA other downstream 1254930 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 1744375 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 2099036 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 2410059 60696612 ~ 60777061 (+)
G1095209 NA other downstream 2529863 60816491 ~ 60818897 (+)

Expression


Co-expression Network